Factsheet for Solyc12g011450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022072	Potato	plastid	99.25	99.25
Solyc07g063600.2.1	Tomato	nucleus	92.83	93.89
KRH22164	Soybean	nucleus, plastid	88.3	87.64
Bra002999.1-P	Field mustard	plastid	87.55	87.55
KRH27171	Soybean	mitochondrion, nucleus, plastid	88.3	87.31
AT5G54270.1	Thale cress	plastid	87.17	87.17
OQU90095	Sorghum	plastid	87.92	86.94
Zm00001d021784_P001	Maize	plastid	87.55	86.25
VIT_00s0181g00180.t01	Wine grape	plastid	87.55	86.25
VIT_00s0181g00200.t01	Wine grape	plastid	87.17	85.87
TraesCS1B01G451100.1	Wheat	plastid	86.42	85.45
TraesCS1D01G428200.1	Wheat	plastid	86.42	85.45
TraesCS2A01G204800.1	Wheat	plastid	86.42	85.45
Os07t0562700-01	Rice	extracellular, plastid	85.28	84.96
HORVU2Hr1G040780.7	Barley	plastid	85.28	83.09
Solyc08g067320.1.1	Tomato	plastid	26.42	76.92
CDY28778	Canola	plastid	73.96	76.56
Solyc02g071000.1.1	Tomato	nucleus, plastid	70.94	70.94
Solyc02g070990.1.1	Tomato	plastid	70.57	70.57
Solyc02g071030.1.1	Tomato	plastid	70.19	70.19
Solyc02g070940.1.1	Tomato	plastid	70.19	70.19
Solyc02g070950.1.1	Tomato	plastid	70.19	70.19
Solyc02g070970.1.1	Tomato	plastid	70.19	70.19
Solyc02g071010.1.1	Tomato	plastid	70.19	70.19
Solyc03g005780.1.1	Tomato	plastid	70.57	70.04
Solyc07g047850.2.1	Tomato	plastid	69.81	69.81
Solyc02g070980.1.1	Tomato	nucleus, plastid	69.81	69.81
Solyc12g006140.1.1	Tomato	plastid	69.43	69.43
Solyc03g005770.1.1	Tomato	nucleus	69.81	69.29
Solyc03g005760.1.1	Tomato	nucleus	69.81	69.29
Solyc08g067330.1.1	Tomato	plastid	22.26	60.2
Zm00001d006592_P001	Maize	plastid	26.42	56.91
Solyc06g063370.2.1	Tomato	plastid	44.15	40.91
Solyc05g056050.2.1	Tomato	plastid	32.83	35.37
Solyc05g056070.2.1	Tomato	plastid	32.83	35.37
Solyc10g007690.2.1	Tomato	plastid	34.72	33.7
Solyc12g011280.1.1	Tomato	plastid	33.96	32.97
Solyc12g009200.1.1	Tomato	nucleus, plastid	32.08	32.69
Solyc03g115900.2.1	Tomato	plastid	30.19	31.87
Solyc06g069730.2.1	Tomato	plastid	29.81	31.6
Solyc09g014520.2.1	Tomato	plastid	32.83	30.53
Solyc10g006230.2.1	Tomato	plastid	30.94	30.37
Solyc07g022900.2.1	Tomato	plastid	27.92	28.24
Solyc01g105030.2.1	Tomato	plastid	27.17	28.12
Solyc01g105050.2.1	Tomato	plastid	26.79	27.73
Solyc04g082920.2.1	Tomato	plastid	22.64	27.52

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	ProteinID:CAA42818.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409
GO:GO:0046872	InterPro:IPR023329	UniProt:P27489	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF11
SUPFAM:SSF103511	EnsemblPlantsGene:Solyc12g011450.1	EnsemblPlants:Solyc12g011450.1.1	UniParc:UPI0000127129	SEG:seg	:

Description

CAB13Chlorophyll a-b binding protein 13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P27489]

Coordinates

chr12:+:4262292..4263398

Molecular Weight (calculated)

28624.3 Da

IEP (calculated)

4.875

GRAVY (calculated)

0.052

Length

265 amino acids

Sequence
(BLAST)

001: MASMAATASS TTVVKATPFL GQTKNANPLR DVVAMGSARF TMSNDLWYGP DRVKYLGPFS AQTPSYLNGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGALGC IFPEVLEKWV KVDFKEPVWF KAGSQIFSDG GLDYLGNPNL VHAQSILAVL GFQVVLMGLV EGFRINGLPG VGEGNDLYPG GQYFDPLGLA
201: DDPTTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWVYATK FVPGA

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.