Factsheet for Solyc02g070990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071030.1.1	Tomato	plastid	99.25	99.25
Solyc02g071010.1.1	Tomato	plastid	99.25	99.25
Solyc02g070970.1.1	Tomato	plastid	99.25	99.25
Solyc02g070950.1.1	Tomato	plastid	99.25	99.25
Solyc02g070940.1.1	Tomato	plastid	99.25	99.25
PGSC0003DMT400021389	Potato	plastid	98.87	98.87
PGSC0003DMT400021390	Potato	plastid	96.98	98.85
Solyc02g070980.1.1	Tomato	nucleus, plastid	98.49	98.49
PGSC0003DMT400092927	Potato	plastid	98.49	98.49
Solyc08g067320.1.1	Tomato	plastid	33.21	96.7
Solyc02g071000.1.1	Tomato	nucleus, plastid	95.47	95.47
Solyc03g005770.1.1	Tomato	nucleus	95.47	94.76
PGSC0003DMT400034897	Potato	plastid	93.21	94.27
Solyc03g005760.1.1	Tomato	nucleus	94.72	94.01
Solyc03g005780.1.1	Tomato	plastid	94.72	94.01
PGSC0003DMT400022698	Potato	plastid	98.11	85.25
Solyc07g047850.2.1	Tomato	plastid	79.25	79.25
Solyc12g006140.1.1	Tomato	plastid	77.36	77.36
Solyc08g067330.1.1	Tomato	plastid	28.3	76.53
Solyc07g063600.2.1	Tomato	nucleus	70.19	70.99
Solyc12g011450.1.1	Tomato	plastid	70.57	70.57
Solyc06g063370.2.1	Tomato	plastid	46.79	43.36
Solyc05g056050.2.1	Tomato	plastid	35.85	38.62
Solyc05g056070.2.1	Tomato	plastid	35.47	38.21
Solyc10g007690.2.1	Tomato	plastid	36.23	35.16
Solyc12g009200.1.1	Tomato	nucleus, plastid	34.34	35.0
Solyc06g069730.2.1	Tomato	plastid	32.45	34.4
Solyc10g006230.2.1	Tomato	plastid	34.34	33.7
Solyc12g011280.1.1	Tomato	plastid	34.72	33.7
Solyc03g115900.2.1	Tomato	plastid	31.7	33.47
Solyc09g014520.2.1	Tomato	plastid	35.09	32.63
Solyc07g022900.2.1	Tomato	plastid	29.06	29.39
Solyc04g082920.2.1	Tomato	plastid	24.15	29.36
Solyc01g105030.2.1	Tomato	plastid	27.92	28.91
Solyc01g105050.2.1	Tomato	plastid	27.55	28.52

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0046872
InterPro:IPR023329	UniProt:K4B877	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF25	SUPFAM:SSF103511
EnsemblPlantsGene:Solyc02g070990.1	EnsemblPlants:Solyc02g070990.1.1	UniParc:UPI0002768A33	SEG:seg	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4B877]

Coordinates

chr2:+:40517380..40518177

Molecular Weight (calculated)

28117.6 Da

IEP (calculated)

4.911

GRAVY (calculated)

0.065

Length

265 amino acids

Sequence
(BLAST)

001: MAASTMALSS PSFVGQAVKL SPSASEISGN GRITMRKAVA KSAPSSSPWY GPDRVKYLGP FSGESPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRIAGGP LGEVVDPLYP GGSFDPLGLA
201: EDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)

001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Arabidopsis Description

LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.