Factsheet for Solyc12g009200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007514	Potato	plastid	97.31	97.31
VIT_11s0016g00730.t01	Wine grape	plastid	80.38	80.69
KRH37524	Soybean	plastid	79.62	79.62
KRH12566	Soybean	plastid	79.23	79.23
Bra016522.1-P	Field mustard	plastid	76.54	74.81
CDX83783	Canola	plastid	76.54	74.81
CDX96677	Canola	plastid	76.54	74.81
AT1G19150.1	Thale cress	plastid	76.92	74.07
GSMUA_Achr9P18200_001	Banana	plastid	38.46	72.99
TraesCS5B01G210800.2	Wheat	cytosol, plastid	64.23	70.17
Os09t0439500-01	Rice	plastid	70.38	69.32
Zm00001d005814_P002	Maize	plastid	70.77	67.9
KXG35708	Sorghum	plastid	70.38	66.55
TraesCS5A01G213000.1	Wheat	plastid	69.62	66.3
TraesCS5D01G219100.1	Wheat	plastid	69.62	65.82
HORVU5Hr1G062240.1	Barley	plastid	71.15	64.91
Solyc10g006230.2.1	Tomato	plastid	58.08	55.93
Solyc08g067320.1.1	Tomato	plastid	17.69	50.55
Solyc06g069730.2.1	Tomato	plastid	43.08	44.8
Solyc03g115900.2.1	Tomato	plastid	43.08	44.62
Solyc12g011280.1.1	Tomato	plastid	40.38	38.46
Solyc10g007690.2.1	Tomato	plastid	40.38	38.46
Solyc05g056070.2.1	Tomato	plastid	36.15	38.21
Solyc07g022900.2.1	Tomato	plastid	38.46	38.17
Solyc05g056050.2.1	Tomato	plastid	35.77	37.8
Solyc01g105030.2.1	Tomato	plastid	35.38	35.94
Solyc03g005780.1.1	Tomato	plastid	36.15	35.21
Solyc01g105050.2.1	Tomato	plastid	34.62	35.16
Solyc03g005760.1.1	Tomato	nucleus	35.77	34.83
Solyc03g005770.1.1	Tomato	nucleus	35.77	34.83
Solyc02g071030.1.1	Tomato	plastid	35.38	34.72
Solyc02g070940.1.1	Tomato	plastid	35.38	34.72
Solyc02g070950.1.1	Tomato	plastid	35.38	34.72
Solyc02g070970.1.1	Tomato	plastid	35.38	34.72
Solyc02g070980.1.1	Tomato	nucleus, plastid	35.38	34.72
Solyc02g071000.1.1	Tomato	nucleus, plastid	35.38	34.72
Solyc02g071010.1.1	Tomato	plastid	35.38	34.72
Solyc02g070990.1.1	Tomato	plastid	35.0	34.34
Solyc12g006140.1.1	Tomato	plastid	33.08	32.45
Solyc09g014520.2.1	Tomato	plastid	35.38	32.28
Solyc12g011450.1.1	Tomato	plastid	32.69	32.08
Solyc07g047850.2.1	Tomato	plastid	32.69	32.08
Solyc07g063600.2.1	Tomato	nucleus	32.31	32.06
Solyc06g063370.2.1	Tomato	plastid	33.85	30.77
Solyc08g067330.1.1	Tomato	plastid	10.77	28.57
Solyc04g082920.2.1	Tomato	plastid	18.08	21.56

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4DC08	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF5	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc12g009200.1
EnsemblPlants:Solyc12g009200.1.1	UniParc:UPI0002769835	:	:	:	:

Description

Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G19150) UniProtKB/Swiss-Prot;Acc:Q8LCQ4]

Coordinates

chr12:-:2485058..2487651

Molecular Weight (calculated)

28913.7 Da

IEP (calculated)

5.948

GRAVY (calculated)

-0.066

Length

260 amino acids

Sequence
(BLAST)

001: MALAIHSTAF SSIPIRELPT KTFSGKFTTC MLSRKSRLYA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPESL KWFAQAELIH
101: SRWAMLAVSG ILIPEWLESL GFIDNFSWYD AGEREYFADS TTLFVVQLAL MGWVEGRRWA DIVNPGCVDI EPKVPHKKRP KTDVGYPGGL WFDPFMWGRG
201: SPEPVMVLRT KEIKNGRLAM LAFVGFCFQA VYTGQGPIEN LMSHLADPGH NNIFAAFASH

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.