Factsheet for Solyc03g005780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 25431925
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25431925 doi

S Muneer, YG Park, A Manivannan, P Soundararajan, BR Jeong

Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. abinayamanivannan@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. brjeong@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. iuyiuy09@naver.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. prabhakaran.s.bioinfo@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. sobiyakhan126@gmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034896	Potato	plastid	98.88	98.88
PGSC0003DMT400034898	Potato	plastid	96.63	98.47
Solyc03g005770.1.1	Tomato	nucleus	97.38	97.38
Solyc03g005760.1.1	Tomato	nucleus	96.63	96.63
Solyc08g067320.1.1	Tomato	plastid	32.58	95.6
Solyc02g070990.1.1	Tomato	plastid	94.01	94.72
Solyc02g071030.1.1	Tomato	plastid	94.01	94.72
Solyc02g071010.1.1	Tomato	plastid	94.01	94.72
Solyc02g070970.1.1	Tomato	plastid	94.01	94.72
Solyc02g070950.1.1	Tomato	plastid	94.01	94.72
Solyc02g070940.1.1	Tomato	plastid	94.01	94.72
PGSC0003DMT400021391	Potato	plastid	91.76	94.23
Solyc02g070980.1.1	Tomato	nucleus, plastid	93.26	93.96
Solyc02g071000.1.1	Tomato	nucleus, plastid	92.51	93.21
Solyc08g067330.1.1	Tomato	plastid	30.34	82.65
Solyc07g047850.2.1	Tomato	plastid	78.28	78.87
Solyc12g006140.1.1	Tomato	plastid	77.9	78.49
Solyc07g063600.2.1	Tomato	nucleus	69.29	70.61
Solyc12g011450.1.1	Tomato	plastid	70.04	70.57
Solyc06g063370.2.1	Tomato	plastid	47.57	44.41
Solyc05g056070.2.1	Tomato	plastid	35.96	39.02
Solyc05g056050.2.1	Tomato	plastid	35.96	39.02
Solyc12g009200.1.1	Tomato	nucleus, plastid	35.21	36.15
Solyc10g007690.2.1	Tomato	plastid	35.58	34.8
Solyc06g069730.2.1	Tomato	plastid	32.21	34.4
Solyc10g006230.2.1	Tomato	plastid	34.46	34.07
Solyc12g011280.1.1	Tomato	plastid	34.83	34.07
Solyc03g115900.2.1	Tomato	plastid	31.46	33.47
Solyc09g014520.2.1	Tomato	plastid	35.21	32.98
Solyc04g082920.2.1	Tomato	plastid	24.72	30.28
Solyc07g022900.2.1	Tomato	plastid	29.21	29.77
Solyc01g105030.2.1	Tomato	plastid	28.09	29.3
Solyc01g105050.2.1	Tomato	plastid	27.72	28.91

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	ProteinID:AAA34148.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409
GO:GO:0046872	InterPro:IPR023329	UniProt:P07369	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56
SUPFAM:SSF103511	EnsemblPlantsGene:Solyc03g005780.1	EnsemblPlants:Solyc03g005780.1.1	UniParc:UPI0000127148	SEG:seg	:

Description

CAB3CChlorophyll a-b binding protein 3C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P07369]

Coordinates

chr3:+:543035..543838

Molecular Weight (calculated)

28326.8 Da

IEP (calculated)

5.347

GRAVY (calculated)

0.003

Length

267 amino acids

Sequence
(BLAST)

001: MATSTMALSS STFAGKAVKL SPSSSEITGN GRVTMRKTAT KAKPASSGSP WYGPDRVKYL GPFSGESPSY LTGEFPGDYG WDTAGLSADP ETFAKNRELE
101: VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGSQIF SEGGLDYLGN PSLVHAQSIL AIWACQVVLM GAVEGYRIAG GPLGEVVDPL YPGGSFDPLG
201: LADDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP LENLADHLAD PVNNNAWAFA TNFVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.