Factsheet for Solyc01g105050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032790	Potato	plastid	96.88	96.88
CDX83967	Canola	extracellular, vacuole	8.59	95.65
Solyc01g105030.2.1	Tomato	plastid	90.62	90.62
VIT_12s0055g01110.t01	Wine grape	plastid	82.81	82.49
CDY35042	Canola	plastid	82.42	81.78
Bra026099.1-P	Field mustard	plastid	82.03	81.4
CDY33376	Canola	plastid	82.03	81.4
GSMUA_Achr10P...	Banana	unclear	47.27	81.21
KRH10515	Soybean	mitochondrion, nucleus, plastid	81.64	80.38
Bra026745.1-P	Field mustard	plastid	81.25	80.31
CDY52865	Canola	plastid	81.25	80.31
AT1G15820.1	Thale cress	plastid	80.86	80.23
Bra016650.1-P	Field mustard	plastid	80.47	80.16
KRH43915	Soybean	mitochondrion, nucleus, plastid	81.64	80.08
CDX81735	Canola	plastid	80.86	79.92
Zm00001d026599_P001	Maize	plastid	77.34	79.84
OQU82564	Sorghum	plastid	79.3	79.61
CDX96833	Canola	plastid	80.47	79.54
Zm00001d001857_P001	Maize	plastid	77.73	78.66
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	75.39	76.59
TraesCS2D01G320900.1	Wheat	plastid	76.17	76.47
TraesCS2B01G340300.1	Wheat	plastid	76.17	76.47
TraesCS2A01G342600.1	Wheat	plastid	76.17	76.47
Zm00001d032051_P001	Maize	mitochondrion	26.17	74.44
CDX83966	Canola	plastid	60.94	68.42
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	70.31	61.43
HORVU2Hr1G079910.1	Barley	cytosol	39.45	49.75
Zm00001d040012_P001	Maize	plastid	25.0	47.06
Zm00001d011218_P001	Maize	plastid	28.52	44.51
Solyc08g067320.1.1	Tomato	plastid	12.5	35.16
Solyc12g009200.1.1	Tomato	nucleus, plastid	35.16	34.62
Solyc03g115900.2.1	Tomato	plastid	32.03	32.67
Solyc05g056050.2.1	Tomato	plastid	31.25	32.52
Solyc05g056070.2.1	Tomato	plastid	31.25	32.52
Solyc07g022900.2.1	Tomato	plastid	33.2	32.44
Solyc06g069730.2.1	Tomato	plastid	31.25	32.0
Solyc10g006230.2.1	Tomato	plastid	33.59	31.85
Solyc09g014520.2.1	Tomato	plastid	33.2	29.82
Solyc08g067330.1.1	Tomato	plastid	11.33	29.59
Solyc12g011280.1.1	Tomato	plastid	30.47	28.57
Solyc03g005770.1.1	Tomato	nucleus	28.91	27.72
Solyc03g005780.1.1	Tomato	plastid	28.91	27.72
Solyc02g071030.1.1	Tomato	plastid	28.52	27.55
Solyc02g070940.1.1	Tomato	plastid	28.52	27.55
Solyc02g070950.1.1	Tomato	plastid	28.52	27.55
Solyc02g070970.1.1	Tomato	plastid	28.52	27.55
Solyc02g070980.1.1	Tomato	nucleus, plastid	28.52	27.55
Solyc02g070990.1.1	Tomato	plastid	28.52	27.55
Solyc02g071000.1.1	Tomato	nucleus, plastid	28.52	27.55
Solyc02g071010.1.1	Tomato	plastid	28.52	27.55
Solyc10g007690.2.1	Tomato	plastid	29.3	27.47
Solyc03g005760.1.1	Tomato	nucleus	28.52	27.34
Solyc07g063600.2.1	Tomato	nucleus	27.73	27.1
Solyc12g011450.1.1	Tomato	plastid	27.73	26.79
Solyc12g006140.1.1	Tomato	plastid	26.56	25.66
Solyc07g047850.2.1	Tomato	plastid	26.56	25.66
Solyc06g063370.2.1	Tomato	plastid	25.39	22.73
Solyc04g082920.2.1	Tomato	plastid	16.8	19.72

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	ProteinID:AAA34146.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:P27525	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF2	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc01g105050.2
EnsemblPlants:Solyc01g105050.2.1	TMHMM:TMhelix	UniParc:UPI000012715A	SEG:seg	:	:

Description

CAP10BChlorophyll a-b binding protein CP24 10B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P27525]

Coordinates

chr1:+:93332721..93333889

Molecular Weight (calculated)

27472.0 Da

IEP (calculated)

6.812

GRAVY (calculated)

0.089

Length

256 amino acids

Sequence
(BLAST)

001: MTTTSATAVL NGLSSSFLTG GKKTQALLGA HVTARVTTPK RFVVAAAAVA PKKSWIPAVK SGGNLVDPEW LDGSLPGDFG FDPLGLGKDP AFLKWYREAE
101: LIHGRWAMAA VLGIFVGQAW SGIPWFEAGA DPGAIAPFSF GSLLGTQLLL MGWVESKRWV DFFDNDSQSI DWATPWSKTA ENFANFTGEQ GYPGGKFFDP
201: LALAGTLNNG VYVPDTEKLE RLKLAEIKHS RLAMLAMLIF YFEAGQGKTP LGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.