CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83967	Canola	extracellular, vacuole	8.63	95.65
Zm00001d026599_P001	Maize	plastid	92.55	95.16
TraesCS2D01G320900.1	Wheat	plastid	89.41	89.41
TraesCS2B01G340300.1	Wheat	plastid	89.41	89.41
TraesCS2A01G342600.1	Wheat	plastid	89.41	89.41
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	86.27	87.3
GSMUA_Achr10P...	Banana	unclear	49.02	83.89
VIT_12s0055g01110.t01	Wine grape	plastid	82.75	82.1
Solyc01g105050.2.1	Tomato	plastid	79.61	79.3
Solyc01g105030.2.1	Tomato	plastid	78.82	78.52
PGSC0003DMT400032791	Potato	plastid	78.82	78.52
PGSC0003DMT400032790	Potato	plastid	78.82	78.52
Bra026099.1-P	Field mustard	plastid	79.22	78.29
KRH10515	Soybean	mitochondrion, nucleus, plastid	79.22	77.69
KRH43915	Soybean	mitochondrion, nucleus, plastid	79.22	77.39
Bra026745.1-P	Field mustard	plastid	78.43	77.22
AT1G15820.1	Thale cress	plastid	76.86	75.97
Bra016650.1-P	Field mustard	plastid	76.08	75.49
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	74.12	64.51
HORVU2Hr1G079910.1	Barley	cytosol	41.57	52.22
EES07574	Sorghum	plastid	38.43	36.84
KXG36552	Sorghum	plastid	34.51	33.46
KXG25214	Sorghum	plastid	32.55	33.07
KXG35708	Sorghum	plastid	34.51	32.0
EER99537	Sorghum	plastid	33.33	29.51
EES04597	Sorghum	plastid	28.24	29.39
EER97145	Sorghum	extracellular, vacuole	19.61	29.24
KXG20345	Sorghum	plastid	29.02	27.92
OQU90095	Sorghum	plastid	28.63	27.24
EES01022	Sorghum	plastid	27.84	26.79
OQU87124	Sorghum	plastid	27.45	26.52
EER93861	Sorghum	plastid	27.06	26.34
EES18693	Sorghum	plastid	27.06	26.04
EER97143	Sorghum	plastid	26.67	25.95
EES09551	Sorghum	plastid	25.88	23.4
EER96508	Sorghum	plastid	27.84	22.61
KXG33266	Sorghum	extracellular	20.0	22.08

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EntrezGene:8085855	UniProt:A0A1Z5RFN9	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	EnsemblPlants:OQU82564	ProteinID:OQU82564	ProteinID:OQU82564.1	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF2	EnsemblPlantsGene:SORBI_3006G264201	SUPFAM:SSF103511	UniParc:UPI0001A872EF	RefSeq:XP_002447312.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:59864204..59865958

Molecular Weight (calculated)

27356.0 Da

IEP (calculated)

8.849

GRAVY (calculated)

0.148

Length

255 amino acids

Sequence
(BLAST)

001: MALASTSATA PAAVLKTPSF LGARRALANA AAAAKPAPRR SLVVVAAVAP KKSWIPAFKS DAEFINPPWL DGSLPGDFGF DPLGLGKDPA FLKWYREAEL
101: IHGRWAMAAV LGIFVGQAWS GIPWFEAGAD PGAIAPFSFG SLLGTQLLLM GWVESKRWVD FFNPDSQSVE WATPWSRTAE NFANFTGEQG YPGGKFFDPL
201: GLAGTVKDGV YIPDVDKLER LKLAEIKHAR LAMLAMLIFY FEAGQGKTPL GALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.