CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006663_P001	Maize	plastid	97.72	98.85
Zm00001d021906_P001	Maize	plastid	98.1	95.56
PGSC0003DMT400037285	Potato	extracellular, vacuole	54.75	92.31
Os07t0577600-01	Rice	plastid	90.87	90.87
TraesCS2B01G220100.1	Wheat	golgi, plastid	87.45	90.2
TraesCS2D01G200700.1	Wheat	plastid	87.07	89.8
TraesCS2A01G187200.1	Wheat	plastid	87.45	89.49
CDY43936	Canola	plastid	79.47	81.64
Bra014433.1-P	Field mustard	plastid	79.09	81.25
CDX89120	Canola	plastid	79.09	81.25
AT3G61470.1	Thale cress	plastid	79.09	80.93
HORVU2Hr1G036960.4	Barley	plastid	85.55	79.79
KRH06319	Soybean	nucleus, plastid	81.75	79.63
Bra003451.1-P	Field mustard	plastid	77.95	79.15
VIT_01s0010g03620.t01	Wine grape	plastid	81.37	78.97
Solyc10g006230.2.1	Tomato	plastid	80.99	78.89
CDY51572	Canola	plastid	77.57	78.76
GSMUA_Achr6P20660_001	Banana	mitochondrion	60.08	77.07
KRH47742	Soybean	nucleus	78.33	73.05
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	68.82	72.69
KRH68993	Soybean	plastid	77.19	65.91
AT5G28450.1	Thale cress	plastid	41.44	63.01
KXG35708	Sorghum	plastid	57.41	54.91
KXG25214	Sorghum	plastid	47.15	49.4
EES07574	Sorghum	plastid	42.59	42.11
EER97145	Sorghum	extracellular, vacuole	24.71	38.01
EES04597	Sorghum	plastid	34.98	37.55
KXG20345	Sorghum	plastid	37.26	36.98
EER97143	Sorghum	plastid	35.36	35.5
EES18693	Sorghum	plastid	35.74	35.47
OQU82564	Sorghum	plastid	33.46	34.51
EES01022	Sorghum	plastid	34.6	34.34
OQU87124	Sorghum	plastid	33.84	33.71
EER99537	Sorghum	plastid	35.36	32.29
EER93861	Sorghum	plastid	31.94	32.06
OQU90095	Sorghum	plastid	31.56	30.97
EES09551	Sorghum	plastid	31.56	29.43
KXG33266	Sorghum	extracellular	24.33	27.71
EER96508	Sorghum	plastid	32.7	27.39

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	UniProt:A0A1B6QF49	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	EnsemblPlants:KXG36552	ProteinID:KXG36552	ProteinID:KXG36552.1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF57	EnsemblPlantsGene:SORBI_3002G352100	SUPFAM:SSF103511	UniParc:UPI00022070F0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:71556302..71558107

Molecular Weight (calculated)

28529.9 Da

IEP (calculated)

5.735

GRAVY (calculated)

-0.087

Length

263 amino acids

Sequence
(BLAST)

001: MALVSASSSS TTAVAALPRN GQQRASSTSF LGGKTLLRQA TEAARPSFAV RAAADPDRPI WFPGSTPPPW LDGSLPGDFG FDPWGLGSDP ESLRWNVQAE
101: LVHCRWAMLG AAGIFIPEFL TKIGILNTPF WYTAGEQQYF TDTTTLFIIE LILIGWAEGR RWADIIKPGS VNTDPIFPSN KLTGTDVGYP GGLWFDPLGW
201: GSGSPEKIKE LRTKEIKNGR LAMLAVMGAW FQAEYTGTGP IDNLFAHLAD PGHATIFQAF TPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.