CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020002_P002	Maize	plastid	92.68	92.38
Os09t0296800-01	Rice	plastid	89.81	87.85
TraesCS5A01G177700.1	Wheat	plastid	86.31	87.42
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	85.99	87.1
TraesCS5B01G175000.1	Wheat	plastid	85.35	86.73
TraesCS5D01G182000.1	Wheat	plastid	85.35	86.45
PGSC0003DMT400025715	Potato	plastid	71.66	70.75
Bra008265.1-P	Field mustard	plastid	72.61	70.37
CDY45980	Canola	plastid	72.29	70.06
GSMUA_Achr9P27480_001	Banana	mitochondrion	71.02	69.25
VIT_18s0122g00430.t01	Wine grape	plastid	72.61	68.88
CDY20401	Canola	plastid	71.66	68.81
KRH06016	Soybean	plastid	71.34	67.47
AT1G76570.1	Thale cress	plastid	69.43	66.67
Solyc04g082920.2.1	Tomato	plastid	44.59	64.22
KRH17548	Soybean	cytosol, peroxisome, plastid	34.39	53.47
EER97145	Sorghum	extracellular, vacuole	26.11	47.95
EES01022	Sorghum	plastid	37.26	44.15
OQU87124	Sorghum	plastid	36.94	43.94
EES18693	Sorghum	plastid	36.94	43.77
EER97143	Sorghum	plastid	35.99	43.13
EER93861	Sorghum	plastid	33.76	40.46
OQU90095	Sorghum	plastid	33.76	39.55
EES04597	Sorghum	plastid	30.25	38.78
EES09551	Sorghum	plastid	34.39	38.3
EES07574	Sorghum	plastid	28.34	33.46
KXG35708	Sorghum	plastid	28.66	32.73
KXG36552	Sorghum	plastid	27.39	32.7
KXG20345	Sorghum	plastid	27.07	32.08
KXG33266	Sorghum	extracellular	23.25	31.6
KXG25214	Sorghum	plastid	24.84	31.08
EER99537	Sorghum	plastid	28.03	30.56
OQU82564	Sorghum	plastid	22.61	27.84

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	EntrezGene:8064653	UniProt:C5X8D1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	ncoils:Coil	EnsemblPlants:EER96508	ProteinID:EER96508	ProteinID:EER96508.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010218	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	EnsemblPlantsGene:SORBI_3002G159100
SUPFAM:SSF103511	unigene:Sbi.1356	UniParc:UPI0001A83809	RefSeq:XP_002459987.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:49231549..49253194

Molecular Weight (calculated)

34301.6 Da

IEP (calculated)

8.073

GRAVY (calculated)

0.119

Length

314 amino acids

Sequence
(BLAST)

001: MLPPPSLLLH SGAPRSALPL QGRRRRSLSV RASWQELAGV LVFSAIPFTA VKALANSPLG ARLRRRLEDR KAAAAAEADA LRAAARGARN NSFWYGGDRP
101: RWLGPVPYDY PEHLTGEYPG DYGFDIAGLG RDPIAFANYF NFEILHCRWA MLAALGVVIP ELLDLFGLVH FVEPVWWKVG YAKLQGDTLD YLGIPGFRIA
201: GGQGVIVIAI CQALLMVGPE YARYCGIEAL EPLGIYLPGD INYPGGALFD PLGLSKDPVA FEDLKVKEIK NGRLAMVAWL GFYIQAAVTG KGPVQNLVEH
301: LSDPLHNNIL SSFH

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.