Factsheet for Zm00001d020002_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96508	Sorghum	plastid	92.38	92.68
TraesCS5A01G177700.1	Wheat	plastid	86.03	87.42
Os09t0296800-01	Rice	plastid	88.57	86.92
TraesCS5D01G182000.1	Wheat	plastid	85.08	86.45
TraesCS5B01G175000.1	Wheat	plastid	84.76	86.41
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	84.76	86.13
Bra008265.1-P	Field mustard	plastid	71.11	69.14
GSMUA_Achr9P27480_001	Banana	mitochondrion	70.48	68.94
PGSC0003DMT400025715	Potato	plastid	69.52	68.87
CDY45980	Canola	plastid	70.79	68.83
VIT_18s0122g00430.t01	Wine grape	plastid	71.43	67.98
CDY20401	Canola	plastid	69.84	67.28
KRH06016	Soybean	plastid	70.16	66.57
AT1G76570.1	Thale cress	plastid	67.94	65.44
Solyc04g082920.2.1	Tomato	plastid	43.17	62.39
KRH17548	Soybean	cytosol, peroxisome, plastid	33.65	52.48
Zm00001d011285_P001	Maize	plastid	38.1	45.45
Zm00001d044396_P001	Maize	plastid	37.46	44.7
Zm00001d044399_P001	Maize	plastid	37.14	44.32
Zm00001d044401_P001	Maize	plastid	37.14	44.32
Zm00001d044402_P001	Maize	plastid	37.14	44.32
Zm00001d021435_P001	Maize	plastid	36.83	44.27
Zm00001d009589_P001	Maize	plastid	37.14	44.15
Zm00001d039040_P001	Maize	plastid	37.14	43.98
Zm00001d033132_P001	Maize	plastid	34.6	41.92
Zm00001d033136_P001	Maize	plastid	34.6	41.92
Zm00001d021784_P001	Maize	plastid	34.29	40.15
Zm00001d006592_P001	Maize	plastid	15.24	39.02
Zm00001d007267_P002	Maize	plastid	34.92	38.87
Zm00001d048998_P001	Maize	plastid	34.92	38.87
Zm00001d015385_P001	Maize	plastid	29.21	37.55
Zm00001d032051_P001	Maize	mitochondrion	10.16	35.56
Zm00001d013766_P001	Maize	plastid	15.87	34.72
Zm00001d018157_P001	Maize	plastid	28.57	33.46
Zm00001d006663_P001	Maize	plastid	26.35	31.92
Zm00001d046786_P001	Maize	plastid	26.98	31.84
Zm00001d021906_P001	Maize	plastid	26.35	30.74
Zm00001d032197_P001	Maize	plastid	23.81	30.36
Zm00001d050403_P001	Maize	plastid	23.49	30.33
Zm00001d005814_P002	Maize	plastid	25.71	29.89
Zm00001d001857_P001	Maize	plastid	23.49	29.25
Zm00001d021763_P001	Maize	plastid	26.98	29.21
Zm00001d006587_P001	Maize	plastid	26.98	29.21
Zm00001d026599_P001	Maize	plastid	22.22	28.23
Zm00001d011218_P001	Maize	plastid	12.7	24.39
Zm00001d024372_P001	Maize	plastid	16.83	22.36
Zm00001d040012_P001	Maize	plastid	9.52	22.06

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	UniProt:A0A1D6I1H7	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009637	GO:GO:0009765	GO:GO:0009987	GO:GO:0010218	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	ProteinID:ONM54065.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	UniParc:UPI0002212762	EnsemblPlantsGene:Zm00001d020002
EnsemblPlants:Zm00001d020002_P002	EnsemblPlants:Zm00001d020002_T002	SEG:seg	:	:	:

Description

Chlorophyll A-B binding family protein

Coordinates

chr7:+:84827006..84838816

Molecular Weight (calculated)

34608.9 Da

IEP (calculated)

8.416

GRAVY (calculated)

0.079

Length

315 amino acids

Sequence
(BLAST)

001: MHPLSSLLLF RSAAPPSALP LRRRRRSHTP VRASWQELAG VLVFSAIPFT AVKALANSPL GARLRRRLED RKAAAAAEAD ALRAASRGAR NNSFWYGGDR
101: PRWLGPVPYD YPEYLTGEYP GDYGFDIAGL GRDPVAFANY FNFEILHCRW AMLAALGVVV PELLDLFGLV HFVEPVWWKV GYAKLQGDNL DYLGIPGFRI
201: AGGQGVVVIA ICQALLMVGP EYARYCGIEA LEPLGIYLPG DINYPGGPLF DPLGLSKDPV AFEDLKVKEI KNGRLAMVAW FGFYIQAAVT GKGPVQNLVE
301: HLSDPLNNNI LSSFH

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.