Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008265.1-P | Field mustard | plastid | 89.3 | 90.12 |
| CDY45980 | Canola | plastid | 88.38 | 89.2 |
| CDY20401 | Canola | plastid | 88.38 | 88.38 |
| VIT_18s0122g00430.t01 | Wine grape | plastid | 76.15 | 75.23 |
| PGSC0003DMT400025715 | Potato | plastid | 73.09 | 75.16 |
| Solyc04g082920.2.1 | Tomato | plastid | 47.09 | 70.64 |
| GSMUA_Achr9P27480_001 | Banana | mitochondrion | 69.42 | 70.5 |
| KRH06016 | Soybean | plastid | 71.56 | 70.48 |
| TraesCS5B01G175000.1 | Wheat | plastid | 66.06 | 69.9 |
| HORVU5Hr1G054000.1 | Barley | mitochondrion, plastid | 66.06 | 69.68 |
| EER96508 | Sorghum | plastid | 66.67 | 69.43 |
| TraesCS5A01G177700.1 | Wheat | plastid | 65.75 | 69.35 |
| TraesCS5D01G182000.1 | Wheat | plastid | 65.44 | 69.03 |
| Zm00001d020002_P002 | Maize | plastid | 65.44 | 67.94 |
| Os09t0296800-01 | Rice | plastid | 65.75 | 66.98 |
| KRH17548 | Soybean | cytosol, peroxisome, plastid | 33.03 | 53.47 |
| AT2G34430.1 | Thale cress | plastid | 34.25 | 42.11 |
| AT2G34420.1 | Thale cress | plastid | 33.33 | 41.13 |
| AT1G29930.1 | Thale cress | plastid | 33.33 | 40.82 |
| AT1G29920.1 | Thale cress | plastid | 33.33 | 40.82 |
| AT1G29910.1 | Thale cress | plastid | 33.33 | 40.82 |
| AT2G05070.1 | Thale cress | plastid | 33.03 | 40.75 |
| AT5G54270.1 | Thale cress | plastid | 32.42 | 40.0 |
| AT3G27690.2 | Thale cress | golgi, plastid | 34.25 | 37.58 |
| AT4G10340.1 | Thale cress | plastid | 31.19 | 36.43 |
| AT3G54890.1 | Thale cress | plastid | 26.3 | 35.68 |
| AT3G08940.2 | Thale cress | plastid | 28.75 | 32.75 |
| AT5G01530.1 | Thale cress | plastid | 28.75 | 32.41 |
| AT1G45474.2 | Thale cress | mitochondrion | 25.08 | 32.03 |
| AT2G05100.2 | Thale cress | plastid | 30.58 | 31.55 |
| AT3G61470.1 | Thale cress | plastid | 24.77 | 31.52 |
| AT1G19150.1 | Thale cress | plastid | 25.99 | 31.48 |
| AT3G47470.1 | Thale cress | plastid | 24.16 | 31.47 |
| AT1G61520.1 | Thale cress | plastid | 25.38 | 30.4 |
| AT2G40100.1 | Thale cress | plastid | 25.38 | 30.07 |
| AT5G28450.1 | Thale cress | plastid | 14.98 | 28.32 |
| AT1G15820.1 | Thale cress | plastid | 22.32 | 28.29 |
Protein Annotations
| MapMan:1.1.1.1.5 | Gene3D:1.10.3460.10 | EntrezGene:843990 | ProteinID:AAG51944.1 | ProteinID:AEE35860.1 | ArrayExpress:AT1G76570 |
| EnsemblPlantsGene:AT1G76570 | RefSeq:AT1G76570 | TAIR:AT1G76570 | RefSeq:AT1G76570-TAIR-G | EnsemblPlants:AT1G76570.1 | TAIR:AT1G76570.1 |
| InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009765 | GO:GO:0009768 |
| GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010218 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0031409 | InterPro:IPR023329 |
| RefSeq:NP_177783.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000223 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0004726 | PO:PO:0005645 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0019018 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF24 | UniProt:Q9C9K1 | SUPFAM:SSF103511 | UniParc:UPI00000A89DE |
| SEG:seg | : | : | : | : | : |
Description
LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
Coordinates
chr1:+:28728998..28730851
Molecular Weight (calculated)
36376.9 Da
IEP (calculated)
8.405
GRAVY (calculated)
-0.037
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.