Factsheet for AT3G27690.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 5
mitochondrion 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025297.1-P	Field mustard	plastid	86.91	97.37
CDY49770	Canola	plastid	86.91	97.37
Bra039070.1-P	Field mustard	plastid	86.58	97.36
CDY20039	Canola	plastid	86.58	97.36
CDY00149	Canola	plastid	86.58	96.99
CDY03989	Canola	plastid	86.58	96.99
CDY13732	Canola	plastid	86.58	96.99
CDX83726	Canola	plastid	86.24	96.62
AT2G05070.1	Thale cress	plastid	84.56	95.09
Bra033022.1-P	Field mustard	plastid	81.88	94.57
VIT_12s0057g00630.t01	Wine grape	plastid	79.53	89.43
Solyc12g006140.1.1	Tomato	plastid	78.86	88.68
KRH74003	Soybean	nucleus, plastid	78.52	88.3
PGSC0003DMT400010985	Potato	plastid	78.19	87.92
KRH14122	Soybean	nucleus, plastid	77.52	87.17
PGSC0003DMT400015740	Potato	plastid	77.52	87.17
Solyc07g047850.2.1	Tomato	plastid	77.18	86.79
GSMUA_Achr4P33040_001	Banana	plastid, unclear	76.85	86.74
Os03t0592500-01	Rice	extracellular	75.5	85.55
Zm00001d033136_P001	Maize	plastid	74.5	85.38
Zm00001d033132_P001	Maize	plastid	74.5	85.38
EER93861	Sorghum	plastid	74.5	84.73
TraesCS5B01G322900.1	Wheat	plastid	74.16	84.03
TraesCS5A01G322500.1	Wheat	plastid	74.16	84.03
TraesCS5D01G329200.1	Wheat	plastid	74.16	84.03
AT1G29920.1	Thale cress	plastid	67.79	75.66
AT1G29930.1	Thale cress	plastid	67.79	75.66
AT1G29910.1	Thale cress	plastid	67.79	75.66
AT2G34420.1	Thale cress	plastid	67.11	75.47
AT2G34430.1	Thale cress	plastid	66.44	74.44
AT2G05100.2	Thale cress	plastid	78.86	74.13
Zm00001d013766_P001	Maize	plastid	34.56	71.53
AT5G54270.1	Thale cress	plastid	60.4	67.92
HORVU5Hr1G082420.1	Barley	plastid	76.17	66.18
AT4G10340.1	Thale cress	plastid	36.24	38.57
AT3G54890.1	Thale cress	plastid	28.52	35.27
AT1G76570.1	Thale cress	plastid	37.58	34.25
AT3G47470.1	Thale cress	plastid	27.85	33.07
AT3G61470.1	Thale cress	plastid	27.85	32.3
AT1G61520.1	Thale cress	plastid	28.86	31.5
AT1G19150.1	Thale cress	plastid	28.52	31.48
AT5G28450.1	Thale cress	plastid	18.12	31.21
AT1G45474.2	Thale cress	mitochondrion	26.51	30.86
AT5G01530.1	Thale cress	plastid	29.19	30.0
AT3G08940.2	Thale cress	plastid	28.86	29.97
AT2G40100.1	Thale cress	plastid	26.17	28.26
AT1G15820.1	Thale cress	plastid	23.15	26.74

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:822391	UniProt:A0A1I9LMB4	ProteinID:AEE77352.1	EMBL:AF134125
EMBL:AF370557	EMBL:AK319055	ProteinID:ANM63722.1	ArrayExpress:AT3G27690	EnsemblPlantsGene:AT3G27690	RefSeq:AT3G27690
TAIR:AT3G27690	RefSeq:AT3G27690-TAIR-G	EnsemblPlants:AT3G27690.2	ProteinID:BAB02693.1	EMBL:BT006298	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009269	GO:GO:0009409	GO:GO:0009416
GO:GO:0009507	GO:GO:0009517	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009644	GO:GO:0009645	GO:GO:0009719
GO:GO:0009765	GO:GO:0009768	GO:GO:0009769	GO:GO:0009941	GO:GO:0009987	GO:GO:0010114
GO:GO:0010218	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0030104	GO:GO:0031409	GO:GO:0046872	GO:GO:0071215
GO:GO:0090333	GO:GO:1903428	InterPro:IPR023329	Symbol:LHCB2.4	RefSeq:NP_001325794.1	RefSeq:NP_189406.1
ProteinID:OAP05366.1	PFAM:PF00504	PFscan:PS51257	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511
SignalP:SignalP-noTM	UniParc:UPI000848CB39	SEG:seg	:	:	:

Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]

Coordinates

chr3:+:10255906..10257489

Molecular Weight (calculated)

32590.0 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.071

Length

298 amino acids

Sequence
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.