Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15050 | Canola | plastid | 75.71 | 90.57 |
| CDX93077 | Canola | plastid | 75.39 | 90.19 |
| Bra013183.1-P | Field mustard | plastid | 75.39 | 90.19 |
| AT2G05070.1 | Thale cress | plastid | 75.08 | 89.81 |
| KRH74003 | Soybean | nucleus, plastid | 68.77 | 82.26 |
| VIT_12s0057g00630.t01 | Wine grape | plastid | 68.77 | 82.26 |
| KRH14122 | Soybean | nucleus, plastid | 67.82 | 81.13 |
| PGSC0003DMT400010985 | Potato | plastid | 67.82 | 81.13 |
| Solyc12g006140.1.1 | Tomato | plastid | 67.82 | 81.13 |
| PGSC0003DMT400015740 | Potato | plastid | 66.88 | 80.0 |
| GSMUA_Achr4P33040_001 | Banana | plastid, unclear | 66.56 | 79.92 |
| Solyc07g047850.2.1 | Tomato | plastid | 66.56 | 79.62 |
| Os03t0592500-01 | Rice | extracellular | 65.62 | 79.09 |
| AT3G27690.2 | Thale cress | golgi, plastid | 74.13 | 78.86 |
| TraesCS5A01G322500.1 | Wheat | plastid | 64.98 | 78.33 |
| TraesCS5B01G322900.1 | Wheat | plastid | 64.98 | 78.33 |
| TraesCS5D01G329200.1 | Wheat | plastid | 64.98 | 78.33 |
| Zm00001d033132_P001 | Maize | plastid | 63.72 | 77.69 |
| Zm00001d033136_P001 | Maize | plastid | 63.72 | 77.69 |
| EER93861 | Sorghum | plastid | 63.72 | 77.1 |
| Zm00001d013766_P001 | Maize | plastid | 32.81 | 72.22 |
| AT2G34420.1 | Thale cress | plastid | 57.41 | 68.68 |
| AT1G29930.1 | Thale cress | plastid | 57.73 | 68.54 |
| AT1G29920.1 | Thale cress | plastid | 57.73 | 68.54 |
| AT1G29910.1 | Thale cress | plastid | 57.73 | 68.54 |
| AT2G34430.1 | Thale cress | plastid | 56.15 | 66.92 |
| AT5G54270.1 | Thale cress | plastid | 52.05 | 62.26 |
| HORVU5Hr1G082420.1 | Barley | plastid | 64.67 | 59.77 |
| AT4G10340.1 | Thale cress | plastid | 31.55 | 35.71 |
| AT3G54890.1 | Thale cress | plastid | 23.66 | 31.12 |
| AT1G76570.1 | Thale cress | plastid | 31.55 | 30.58 |
| AT3G47470.1 | Thale cress | plastid | 23.66 | 29.88 |
| AT1G45474.2 | Thale cress | mitochondrion | 23.66 | 29.3 |
| AT3G61470.1 | Thale cress | plastid | 23.34 | 28.79 |
| AT1G19150.1 | Thale cress | plastid | 24.29 | 28.52 |
| AT5G01530.1 | Thale cress | plastid | 25.55 | 27.93 |
| AT3G08940.2 | Thale cress | plastid | 25.24 | 27.87 |
| AT1G61520.1 | Thale cress | plastid | 23.97 | 27.84 |
| AT2G40100.1 | Thale cress | plastid | 23.03 | 26.45 |
| AT1G15820.1 | Thale cress | plastid | 20.82 | 25.58 |
| AT5G28450.1 | Thale cress | plastid | 13.56 | 24.86 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | EntrezGene:815058 | UniProt:A0A1P8AZ91 | ProteinID:ANM61984.1 | ArrayExpress:AT2G05100 |
| EnsemblPlantsGene:AT2G05100 | RefSeq:AT2G05100 | TAIR:AT2G05100 | RefSeq:AT2G05100-TAIR-G | EnsemblPlants:AT2G05100.2 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 |
| GO:GO:0018298 | GO:GO:0019538 | InterPro:IPR023329 | Symbol:LHCB2.1 | RefSeq:NP_001324168.1 | PFAM:PF00504 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF33 | SUPFAM:SSF103511 | TMHMM:TMhelix | UniParc:UPI0008488F4F | SEG:seg |
Description
LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
Coordinates
chr2:-:1823035..1824480
Molecular Weight (calculated)
35155.2 Da
IEP (calculated)
7.044
GRAVY (calculated)
-0.083
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTDAGEFV LAPEKTFNEP HHPVMFSVII RKSRPGHGTD IRKNYDICYS IRFNRILDFV ICFGSKIFGY
301: LDFFVIFGDI RFDKYKY
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTDAGEFV LAPEKTFNEP HHPVMFSVII RKSRPGHGTD IRKNYDICYS IRFNRILDFV ICFGSKIFGY
301: LDFFVIFGDI RFDKYKY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.