CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013183.1-P	Field mustard	plastid	100.0	100.0
CDY15050	Canola	plastid	99.62	99.62
AT2G05070.1	Thale cress	plastid	97.36	97.36
CDY49770	Canola	plastid	97.36	96.99
CDY20039	Canola	plastid	96.98	96.98
CDY13732	Canola	plastid	96.98	96.62
CDY03989	Canola	plastid	96.98	96.62
CDY00149	Canola	plastid	96.98	96.62
CDX83726	Canola	plastid	96.6	96.24
VIT_12s0057g00630.t01	Wine grape	plastid	90.19	90.19
KRH74003	Soybean	nucleus, plastid	88.68	88.68
Solyc12g006140.1.1	Tomato	plastid	88.3	88.3
PGSC0003DMT400010985	Potato	plastid	88.3	88.3
GSMUA_Achr4P33040_001	Banana	plastid, unclear	87.55	87.88
KRH14122	Soybean	nucleus, plastid	87.55	87.55
PGSC0003DMT400015740	Potato	plastid	87.17	87.17
Solyc07g047850.2.1	Tomato	plastid	86.79	86.79
Os03t0592500-01	Rice	extracellular	85.28	85.93
Zm00001d033132_P001	Maize	plastid	83.77	85.38
Zm00001d033136_P001	Maize	plastid	83.77	85.38
EER93861	Sorghum	plastid	83.77	84.73
TraesCS5B01G322900.1	Wheat	plastid	83.77	84.41
TraesCS5D01G329200.1	Wheat	plastid	83.77	84.41
TraesCS5A01G322500.1	Wheat	plastid	83.77	84.41
CDY30369	Canola	plastid	46.79	81.58
CDX84647	Canola	plastid	76.23	75.94
CDY66768	Canola	plastid	76.23	75.66
CDY43676	Canola	plastid	76.23	75.66
CDX79562	Canola	plastid	75.85	75.56
AT2G05100.2	Thale cress	plastid	90.19	75.39
CDY35271	Canola	plastid	75.85	75.28
CDX99866	Canola	plastid	75.85	75.28
CDY43198	Canola	plastid	75.85	75.28
CDY26306	Canola	plastid	75.85	75.28
CDX90218	Canola	plastid	75.85	75.28
CDX84316	Canola	plastid	75.47	75.19
CDY17247	Canola	plastid	75.47	75.19
CDY17248	Canola	plastid	75.47	75.19
CDX98158	Canola	plastid	75.09	74.53
Zm00001d013766_P001	Maize	plastid	39.25	72.22
CDY66572	Canola	cytosol, extracellular, plastid	37.36	69.23
CDY17250	Canola	mitochondrion, plastid	42.26	68.71
CDY14320	Canola	plastid	60.38	68.38
CDY18320	Canola	plastid	60.0	67.95
CDY52238	Canola	plastid	59.62	67.52
HORVU5Hr1G082420.1	Barley	plastid	84.15	65.01
CDX84315	Canola	plastid	75.09	60.49
CDY28778	Canola	plastid	58.11	60.16
CDX90755	Canola	plastid	42.26	40.0
CDY05098	Canola	plastid	42.26	40.0
CDY60092	Canola	plastid	40.75	38.43
CDX78277	Canola	plastid	32.08	35.27
CDX73435	Canola	plastid	32.08	35.27
CDX67613	Canola	plastid	32.08	35.27
CDY07517	Canola	plastid	32.08	35.27
CDX83967	Canola	extracellular, vacuole	3.02	34.78
CDY20401	Canola	plastid	40.75	33.03
CDY45980	Canola	plastid	40.38	33.02
CDY43936	Canola	plastid	31.7	32.81
CDX86864	Canola	plastid	25.66	32.54
CDX89120	Canola	plastid	31.32	32.42
CDX99044	Canola	plastid	30.57	32.14
CDY47410	Canola	plastid	30.57	32.14
CDY26347	Canola	plastid	30.57	31.76
CDY12903	Canola	plastid	32.45	31.73
CDY57375	Canola	plastid	32.45	31.73
CDY51572	Canola	plastid	30.94	31.66
CDX96677	Canola	plastid	31.7	31.58
CDX83783	Canola	plastid	31.7	31.58
CDY15020	Canola	plastid	32.08	31.37
CDY03835	Canola	plastid	32.08	31.14
CDY47581	Canola	plastid	32.08	31.14
CDY44667	Canola	plastid	33.21	30.56
CDY53084	Canola	plastid	33.21	30.45
CDY04834	Canola	plastid	32.83	30.31
CDY43213	Canola	mitochondrion, plastid	28.68	29.46
CDY17055	Canola	mitochondrion, plastid	28.3	29.07
CDX74808	Canola	plastid	29.06	27.9
CDY20518	Canola	plastid	28.68	27.54
CDY52865	Canola	plastid	26.79	27.41
CDX81735	Canola	plastid	26.79	27.41
CDX96833	Canola	plastid	26.42	27.03
CDY35042	Canola	plastid	25.66	26.36
CDY33376	Canola	plastid	25.66	26.36
CDX83966	Canola	plastid	22.26	25.88
CDY61708	Canola	plastid	25.28	19.14

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	GO:A0A078DW13	unigene:Bna.610	EnsemblPlants:CDX93077	ProteinID:CDX93077
ProteinID:CDX93077.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
EnsemblPlantsGene:GSBRNA2T00154986001	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511
UniParc:UPI0002540918	SEG:seg	:	:	:	:

Description

BnaA03g37990D

Coordinates

chrLK031874:-:1069545..1070639

Molecular Weight (calculated)

28605.1 Da

IEP (calculated)

5.348

GRAVY (calculated)

-0.112

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQQSS FAGQTALKPS NDLLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WACQVVLMGL IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G05100.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGN

Arabidopsis Description

LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.