CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
extracellular 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G086800.1	Wheat	cytosol	55.21	91.84
Solyc08g067320.1.1	Tomato	plastid	49.08	87.91
CDY30369	Canola	plastid	78.53	84.21
KRH08634	Soybean	endoplasmic reticulum	61.35	80.65
CDY66572	Canola	cytosol, extracellular, plastid	50.92	58.04
PGSC0003DMT400034894	Potato	plastid	61.35	51.28
CDY17248	Canola	plastid	81.6	50.0
CDY17247	Canola	plastid	80.98	49.62
CDX84316	Canola	plastid	80.98	49.62
CDY35271	Canola	plastid	80.37	49.06
CDX90218	Canola	plastid	80.37	49.06
CDX84647	Canola	plastid	79.75	48.87
CDX79562	Canola	plastid	79.75	48.87
CDY43676	Canola	plastid	79.75	48.69
CDY66768	Canola	plastid	79.75	48.69
CDX99866	Canola	plastid	79.75	48.69
CDY26306	Canola	plastid	79.75	48.69
CDY43198	Canola	plastid	79.14	48.31
CDX98158	Canola	plastid	79.14	48.31
PGSC0003DMT400034893	Potato	plastid	77.3	48.09
PGSC0003DMT400021390	Potato	plastid	76.69	48.08
PGSC0003DMT400034892	Potato	plastid	76.69	47.71
PGSC0003DMT400034897	Potato	plastid	76.69	47.71
PGSC0003DMT400021392	Potato	plastid	76.07	47.69
PGSC0003DMT400034898	Potato	plastid	76.07	47.33
PGSC0003DMT400021391	Potato	plastid	75.46	47.31
PGSC0003DMT400021389	Potato	plastid	76.69	47.17
PGSC0003DMT400092927	Potato	plastid	76.69	47.17
PGSC0003DMT400034896	Potato	plastid	76.69	46.82
PGSC0003DMT400034899	Potato	plastid	76.69	46.82
PGSC0003DMT400021422	Potato	plastid	76.07	46.79
PGSC0003DMT400043054	Potato	plastid	76.07	46.44
CDX93077	Canola	plastid	68.71	42.26
CDY15050	Canola	plastid	68.71	42.26
CDY20039	Canola	plastid	68.71	42.26
CDY03989	Canola	plastid	68.71	42.11
CDY13732	Canola	plastid	68.71	42.11
CDY49770	Canola	plastid	68.71	42.11
CDY00149	Canola	plastid	68.71	42.11
CDX83726	Canola	plastid	68.1	41.73
PGSC0003DMT400022698	Potato	plastid	76.69	40.98
CDX84315	Canola	plastid	80.37	39.82
CDX83967	Canola	extracellular, vacuole	5.52	39.13
PGSC0003DMT400019031	Potato	plastid	76.69	38.11
CDY14320	Canola	plastid	52.76	36.75
CDY18320	Canola	plastid	52.15	36.32
CDY52238	Canola	plastid	51.53	35.9
CDY28778	Canola	plastid	52.76	33.59
CDX90755	Canola	plastid	42.94	25.0
CDY05098	Canola	plastid	42.94	25.0
CDY60092	Canola	plastid	42.33	24.56
CDX73435	Canola	plastid	36.2	24.48
CDX78277	Canola	plastid	36.2	24.48
CDX67613	Canola	plastid	36.2	24.48
CDY07517	Canola	plastid	36.2	24.48
CDY26347	Canola	plastid	34.36	21.96
CDY43936	Canola	plastid	34.36	21.88
CDX89120	Canola	plastid	34.36	21.88
CDY45980	Canola	plastid	42.33	21.3
CDY51572	Canola	plastid	33.74	21.24
CDY20401	Canola	plastid	41.72	20.8
CDY15020	Canola	plastid	34.36	20.66
CDY12903	Canola	plastid	34.36	20.66
CDY57375	Canola	plastid	34.36	20.66
CDY47581	Canola	plastid	34.36	20.51
CDY03835	Canola	plastid	34.36	20.51
CDY43213	Canola	mitochondrion, plastid	31.9	20.16
CDY04834	Canola	plastid	34.97	19.86
CDX99044	Canola	plastid	30.67	19.84
CDY47410	Canola	plastid	30.67	19.84
CDY44667	Canola	plastid	34.97	19.79
CDY17055	Canola	mitochondrion, plastid	31.29	19.77
CDY53084	Canola	plastid	34.97	19.72
CDX83783	Canola	plastid	31.29	19.17
CDX96677	Canola	plastid	31.29	19.17
CDX96833	Canola	plastid	29.45	18.53
CDX74808	Canola	plastid	30.67	18.12
CDY35042	Canola	plastid	28.22	17.83
CDY33376	Canola	plastid	28.22	17.83
CDY52865	Canola	plastid	28.22	17.76
CDX81735	Canola	plastid	28.22	17.76
CDY20518	Canola	plastid	29.45	17.39
CDX83966	Canola	plastid	21.47	15.35
CDY61708	Canola	plastid	30.67	14.29
CDX86864	Canola	plastid	17.18	13.4
Solyc08g067330.1.1	Tomato	plastid	7.98	13.27

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	GO:A0A078FRU5	UniProt:A0A078FRU5	EnsemblPlants:CDY17250	ProteinID:CDY17250
ProteinID:CDY17250.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00095328001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF8	SUPFAM:SSF103511	UniParc:UPI0004EE4517	SEG:seg

Description

BnaA05g09380DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078FRU5]

Coordinates

chrLK032071:+:645128..646163

Molecular Weight (calculated)

17678.4 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.050

Length

163 amino acids

Sequence
(BLAST)

001: MLGALGCVFP KLLARNGVKF GEADWFKDLQ RRRARLLGKP ELGPRTEHLS HLGYSAIWAT QVILMGAVEG YRVAGDGPLG EGEDLLYPGG SFDPLGLAAD
101: PEAFAELKVK EIKNGRLAMF SMFGFFVQAI VTGKGPLENL ADHSADPVNN HAWALATNFV PRK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.