Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035007 | Potato | cytosol, extracellular, vacuole | 60.69 | 99.38 |
| PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 60.69 | 99.38 |
| PGSC0003DMT400034897 | Potato | plastid | 97.71 | 97.71 |
| PGSC0003DMT400034893 | Potato | plastid | 96.95 | 96.95 |
| PGSC0003DMT400034898 | Potato | plastid | 96.56 | 96.56 |
| PGSC0003DMT400034894 | Potato | plastid | 71.76 | 96.41 |
| TraesCSU01G086800.1 | Wheat | cytosol | 35.88 | 95.92 |
| PGSC0003DMT400021390 | Potato | plastid | 94.66 | 95.38 |
| PGSC0003DMT400034896 | Potato | plastid | 96.95 | 95.13 |
| PGSC0003DMT400034899 | Potato | plastid | 96.18 | 94.38 |
| PGSC0003DMT400021391 | Potato | plastid | 93.13 | 93.85 |
| PGSC0003DMT400021392 | Potato | plastid | 93.13 | 93.85 |
| PGSC0003DMT400092927 | Potato | plastid | 94.66 | 93.58 |
| PGSC0003DMT400043054 | Potato | plastid | 95.04 | 93.26 |
| PGSC0003DMT400021389 | Potato | plastid | 94.27 | 93.21 |
| PGSC0003DMT400021422 | Potato | plastid | 93.89 | 92.83 |
| KRH08634 | Soybean | endoplasmic reticulum | 43.89 | 92.74 |
| PGSC0003DMT400034902 | Potato | plastid | 46.18 | 92.37 |
| PGSC0003DMT400022698 | Potato | plastid | 95.04 | 81.64 |
| PGSC0003DMT400015740 | Potato | plastid | 79.77 | 78.87 |
| PGSC0003DMT400019031 | Potato | plastid | 98.09 | 78.35 |
| PGSC0003DMT400010985 | Potato | plastid | 77.86 | 76.98 |
| CDY17250 | Canola | mitochondrion, plastid | 47.71 | 76.69 |
| PGSC0003DMT400049550 | Potato | plastid | 69.08 | 69.08 |
| PGSC0003DMT400022072 | Potato | plastid | 69.08 | 68.3 |
| PGSC0003DMT400068129 | Potato | plastid | 48.09 | 44.21 |
| PGSC0003DMT400037285 | Potato | extracellular, vacuole | 24.05 | 40.38 |
| PGSC0003DMT400059995 | Potato | plastid | 34.73 | 36.99 |
| PGSC0003DMT400060313 | Potato | plastid | 34.73 | 36.99 |
| PGSC0003DMT400025715 | Potato | plastid | 42.75 | 35.22 |
| PGSC0003DMT400007514 | Potato | plastid | 34.73 | 35.0 |
| PGSC0003DMT400054836 | Potato | plastid | 34.35 | 32.97 |
| PGSC0003DMT400083158 | Potato | plastid | 31.3 | 32.8 |
| PGSC0003DMT400020100 | Potato | plastid | 33.97 | 32.6 |
| PGSC0003DMT400021871 | Potato | plastid | 35.11 | 32.28 |
| PGSC0003DMT400050232 | Potato | plastid | 30.15 | 31.47 |
| PGSC0003DMT400032791 | Potato | plastid | 28.24 | 28.91 |
| PGSC0003DMT400032790 | Potato | plastid | 28.24 | 28.91 |
| PGSC0003DMT400011381 | Potato | plastid | 22.9 | 22.56 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | ProteinID:ABB55370 | ProteinID:ABB55370.1 | ProteinID:CAA78379 | ProteinID:CAA78379.1 |
| InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | EMBL:DQ252493 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | InterPro:IPR023329 | UniProt:M1B1G7 |
| PFAM:PF00504 | EnsemblPlantsGene:PGSC0003DMG400013411 | PGSC:PGSC0003DMG400013411 | EnsemblPlants:PGSC0003DMT400034892 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF56 |
| SUPFAM:SSF103511 | UniParc:UPI0002966AE8 | EMBL:Z13987 | SEG:seg | : | : |
Description
Chlorophyll a-b binding protein 3C, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400013411]
Coordinates
chr3:+:748555..749567
Molecular Weight (calculated)
27845.3 Da
IEP (calculated)
5.347
GRAVY (calculated)
0.029
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSSSTFVG KAVKLSPSSS EITGNGRITM RKTAAKAKPA SSGSPWYGPD RVKYLGPFSG EAPSYLTGEF PGDYGWDTAG LSADPETFAK NRELEVIHCR
101: WAMLGALGCV FPELLARNGV KFGEAIWFKA GSQIFSEGGL DYLGNPSLVH AQSILAIWAC QVVLMGAVEG YRIAGGPLGE VVDPLYPGGS FDPLGLADDP
201: EAFAELKVKE IKNGRLAMFS MFGFFVQAIV TGKGPLENLA DHLADPVNNN AWAFATNFVP GK
101: WAMLGALGCV FPELLARNGV KFGEAIWFKA GSQIFSEGGL DYLGNPSLVH AQSILAIWAC QVVLMGAVEG YRIAGGPLGE VVDPLYPGGS FDPLGLADDP
201: EAFAELKVKE IKNGRLAMFS MFGFFVQAIV TGKGPLENLA DHLADPVNNN AWAFATNFVP GK
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.