Factsheet for PGSC0003DMT400011381

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g022900.2.1	Tomato	plastid	74.44	75.57
VIT_18s0001g10550.t01	Wine grape	plastid	64.29	64.77
AT1G45474.2	Thale cress	mitochondrion	56.77	58.98
Bra014048.1-P	Field mustard	mitochondrion, plastid	56.39	58.14
CDY17055	Canola	mitochondrion, plastid	56.39	58.14
CDY43213	Canola	mitochondrion, plastid	56.02	57.75
TraesCS6B01G312900.1	Wheat	plastid	31.2	57.24
TraesCS6D01G299200.1	Wheat	plastid	53.38	55.91
TraesCS6A01G319700.1	Wheat	plastid	52.63	55.12
KRH51989	Soybean	nucleus	59.02	55.09
EES07574	Sorghum	plastid	54.89	54.89
TraesCS6B01G350500.1	Wheat	plastid	53.01	54.86
Os02t0764500-01	Rice	plastid	53.38	54.41
GSMUA_Achr7P13020_001	Banana	plastid	55.26	54.04
Zm00001d018157_P001	Maize	plastid	53.76	53.16
KRH61286	Soybean	mitochondrion	42.11	51.14
PGSC0003DMT400083158	Potato	plastid	33.08	35.2
PGSC0003DMT400032791	Potato	plastid	32.33	33.59
PGSC0003DMT400050232	Potato	plastid	31.58	33.47
PGSC0003DMT400037285	Potato	extracellular, vacuole	19.55	33.33
PGSC0003DMT400032790	Potato	plastid	31.95	33.2
PGSC0003DMT400007514	Potato	plastid	31.58	32.31
PGSC0003DMT400020100	Potato	plastid	32.33	31.5
PGSC0003DMT400054836	Potato	plastid	31.95	31.14
PGSC0003DMT400060313	Potato	plastid	26.32	28.46
PGSC0003DMT400059995	Potato	plastid	25.94	28.05
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	14.29	23.75
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	14.29	23.75
PGSC0003DMT400034893	Potato	plastid	22.93	23.28
PGSC0003DMT400034896	Potato	plastid	23.31	23.22
PGSC0003DMT400021391	Potato	plastid	22.56	23.08
PGSC0003DMT400021392	Potato	plastid	22.56	23.08
PGSC0003DMT400021390	Potato	plastid	22.56	23.08
PGSC0003DMT400021422	Potato	plastid	22.93	23.02
PGSC0003DMT400021389	Potato	plastid	22.93	23.02
PGSC0003DMT400092927	Potato	plastid	22.93	23.02
PGSC0003DMT400034897	Potato	plastid	22.56	22.9
PGSC0003DMT400034892	Potato	plastid	22.56	22.9
PGSC0003DMT400034902	Potato	plastid	11.28	22.9
PGSC0003DMT400034898	Potato	plastid	22.56	22.9
PGSC0003DMT400043054	Potato	plastid	22.93	22.85
PGSC0003DMT400034899	Potato	plastid	22.93	22.85
PGSC0003DMT400021871	Potato	plastid	24.44	22.81
PGSC0003DMT400068129	Potato	plastid	24.06	22.46
PGSC0003DMT400049550	Potato	plastid	21.8	22.14
PGSC0003DMT400022072	Potato	plastid	21.43	21.51
PGSC0003DMT400015740	Potato	plastid	21.43	21.51
PGSC0003DMT400010985	Potato	plastid	21.43	21.51
PGSC0003DMT400025715	Potato	plastid	24.06	20.13
PGSC0003DMT400022698	Potato	plastid	22.93	20.0
PGSC0003DMT400034894	Potato	plastid	14.66	20.0
PGSC0003DMT400019031	Potato	plastid	23.68	19.21

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	EntrezGene:102590384	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009644	GO:GO:0009645	GO:GO:0009765	GO:GO:0009768
GO:GO:0009782	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0042803	InterPro:IPR023329	UniProt:M0ZZH4
PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400004458	PGSC:PGSC0003DMG400004458	EnsemblPlants:PGSC0003DMT400011381	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23
SUPFAM:SSF103511	TMHMM:TMhelix	UniParc:UPI000294E46C	SEG:seg	:	:

Description

Light-harvesting complex I protein Lhca5 [Source:PGSC_GENE;Acc:PGSC0003DMG400004458]

Coordinates

chr7:-:31603459..31605657

Molecular Weight (calculated)

29505.0 Da

IEP (calculated)

8.891

GRAVY (calculated)

0.103

Length

266 amino acids

Sequence
(BLAST)

001: MEIAVGRGFQ VLTLSGSSFH GKSIRKTCVS LKGFNWTSAR KGHSLTPCTT LVQAHQRPTW LPGLDPPPHL DGTLAGDFGF DPLGLGEDPE SLRWYVQAEL
101: VHARFAMAGV AGILLTDLLR VTGIRDLPVW YEAGATKFNF ASTTTLLIIQ LLLMGFVETK RYMDFLDPGS QAKPGSFFGL EAALEGLEPG YPGGPLLNPL
201: GIGKDIKNAK DWKLKEIKNG LLRCIILLVL LSLVQYLYFP LFRRTPSYGG YAWYFRSVFC YSCWSY

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.