Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 100.0 | 100.0 |
| GSMUA_Achr5P09230_001 | Banana | cytosol, extracellular, plastid | 79.38 | 95.49 |
| TraesCS1B01G317500.1 | Wheat | plastid | 79.38 | 83.01 |
| PGSC0003DMT400034894 | Potato | plastid | 79.38 | 65.13 |
| GSMUA_Achr4P07890_001 | Banana | plastid | 63.75 | 64.15 |
| PGSC0003DMT400021390 | Potato | plastid | 100.0 | 61.54 |
| PGSC0003DMT400034897 | Potato | plastid | 100.0 | 61.07 |
| PGSC0003DMT400021392 | Potato | plastid | 98.75 | 60.77 |
| PGSC0003DMT400034893 | Potato | plastid | 99.38 | 60.69 |
| PGSC0003DMT400034892 | Potato | plastid | 99.38 | 60.69 |
| PGSC0003DMT400021391 | Potato | plastid | 98.12 | 60.38 |
| PGSC0003DMT400021389 | Potato | plastid | 100.0 | 60.38 |
| PGSC0003DMT400092927 | Potato | plastid | 100.0 | 60.38 |
| PGSC0003DMT400034898 | Potato | plastid | 98.75 | 60.31 |
| PGSC0003DMT400034896 | Potato | plastid | 100.0 | 59.93 |
| PGSC0003DMT400034899 | Potato | plastid | 100.0 | 59.93 |
| PGSC0003DMT400021422 | Potato | plastid | 98.12 | 59.25 |
| PGSC0003DMT400043054 | Potato | plastid | 98.75 | 59.18 |
| Os01t0720500-01 | Rice | plastid | 97.5 | 58.87 |
| GSMUA_Achr2P09300_001 | Banana | plasma membrane, plastid, unclear | 97.5 | 58.43 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 96.25 | 58.33 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 96.25 | 58.33 |
| VIT_07s0005g02220.t01 | Wine grape | plastid | 95.62 | 58.17 |
| VIT_19s0014g00160.t01 | Wine grape | plastid | 96.25 | 57.68 |
| VIT_12s0028g00320.t01 | Wine grape | plastid | 95.62 | 56.67 |
| PGSC0003DMT400015740 | Potato | plastid | 88.75 | 53.58 |
| PGSC0003DMT400010985 | Potato | plastid | 87.5 | 52.83 |
| PGSC0003DMT400022698 | Potato | plastid | 100.0 | 52.46 |
| PGSC0003DMT400019031 | Potato | plastid | 100.0 | 48.78 |
| PGSC0003DMT400022072 | Potato | plastid | 77.5 | 46.79 |
| PGSC0003DMT400049550 | Potato | plastid | 76.25 | 46.56 |
| PGSC0003DMT400037285 | Potato | extracellular, vacuole | 39.38 | 40.38 |
| PGSC0003DMT400068129 | Potato | plastid | 50.62 | 28.42 |
| PGSC0003DMT400059995 | Potato | plastid | 40.0 | 26.02 |
| PGSC0003DMT400060313 | Potato | plastid | 40.0 | 26.02 |
| PGSC0003DMT400007514 | Potato | plastid | 39.38 | 24.23 |
| PGSC0003DMT400025715 | Potato | plastid | 48.12 | 24.21 |
| PGSC0003DMT400054836 | Potato | plastid | 40.0 | 23.44 |
| PGSC0003DMT400020100 | Potato | plastid | 38.75 | 22.71 |
| PGSC0003DMT400083158 | Potato | plastid | 34.38 | 22.0 |
| PGSC0003DMT400021871 | Potato | plastid | 38.75 | 21.75 |
| PGSC0003DMT400050232 | Potato | plastid | 32.5 | 20.72 |
| PGSC0003DMT400034902 | Potato | plastid | 15.0 | 18.32 |
| PGSC0003DMT400032791 | Potato | plastid | 28.12 | 17.58 |
| PGSC0003DMT400032790 | Potato | plastid | 27.5 | 17.19 |
| PGSC0003DMT400011381 | Potato | plastid | 23.75 | 14.29 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | InterPro:IPR023329 |
| UniProt:M1B1N5 | PFAM:PF00504 | EnsemblPlantsGene:PGSC0003DMG400013461 | PGSC:PGSC0003DMG400013461 | EnsemblPlants:PGSC0003DMT400035007 | PANTHER:PTHR21649 |
| PANTHER:PTHR21649:SF25 | SUPFAM:SSF103511 | UniParc:UPI000294FF58 | : | : | : |
Description
Chlorophyll a-b binding protein 3C, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400013461]
Coordinates
chr3:-:762596..763613
Molecular Weight (calculated)
16945.5 Da
IEP (calculated)
4.508
GRAVY (calculated)
0.326
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGALGCVFP ELLARNGVKF GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWACQV VLMGAVEGYR IAGGPLGEVV DPLYPGGSFD PLGLADDPEA
101: FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH LADPVNNNAW AFATNFVPGK
101: FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH LADPVNNNAW AFATNFVPGK
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.