Factsheet for GSMUA_Achr2P09300_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, unclear, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

unclear: 20177697
plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	49.44	99.25
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	48.69	97.74
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	58.43	97.5
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	58.43	97.5
VIT_19s0014g00160.t01	Wine grape	plastid	93.26	93.26
Os01t0720500-01	Rice	plastid	92.13	92.83
TraesCS6B01G122500.1	Wheat	cytosol, extracellular, plastid	55.06	91.88
TraesCS5D01G464700.1	Wheat	plastid	91.01	91.35
EES01022	Sorghum	plastid	90.64	91.32
OQU87124	Sorghum	plastid	90.26	91.29
TraesCS5B01G463100.1	Wheat	plastid	90.64	90.98
Zm00001d011285_P001	Maize	plastid	89.89	90.91
GSMUA_Achr4P07890_001	Banana	plastid	53.93	90.57
TraesCS6B01G122700.1	Wheat	mitochondrion, plastid	71.91	90.57
TraesCS5D01G464900.1	Wheat	plastid	89.89	90.23
TraesCS5B01G463000.1	Wheat	plastid	89.89	90.23
TraesCS5B01G462800.1	Wheat	plastid	89.51	89.85
TraesCS5A01G454300.1	Wheat	plastid	89.51	89.85
Zm00001d044399_P001	Maize	plastid	88.76	89.77
Zm00001d044401_P001	Maize	plastid	88.76	89.77
Zm00001d044402_P001	Maize	plastid	88.76	89.77
TraesCS5A01G454200.1	Wheat	plastid	89.14	89.47
TraesCS1D01G411600.1	Wheat	plastid	89.14	89.47
TraesCS1B01G432700.1	Wheat	plastid	89.14	89.47
TraesCS1A01G403300.1	Wheat	plastid	89.14	89.47
TraesCSU01G167700.1	Wheat	plastid	88.76	89.43
Zm00001d044396_P001	Maize	plastid	88.39	89.39
TraesCS1D01G411300.1	Wheat	plastid	88.76	89.1
TraesCS1B01G433300.1	Wheat	plastid	88.76	89.1
TraesCS1A01G403800.1	Wheat	plastid	88.76	89.1
TraesCS7B01G103300.1	Wheat	plastid	88.76	89.1
TraesCS1D01G375100.1	Wheat	plastid	88.39	89.06
TraesCS6D01G088800.1	Wheat	plastid	88.39	88.72
TraesCS7D01G199400.1	Wheat	plastid	88.39	88.72
TraesCS5D01G464800.1	Wheat	plastid	88.39	88.72
TraesCS5D01G357600.1	Wheat	plastid	88.02	88.68
TraesCS1D01G374900.1	Wheat	plastid	88.02	88.68
TraesCS5A01G350600.1	Wheat	plastid	88.02	88.68
TraesCSU01G250000.1	Wheat	plastid	88.02	88.35
TraesCS6B01G122800.1	Wheat	plastid	88.02	88.35
TraesCS1B01G388200.1	Wheat	plastid	87.64	88.3
TraesCS5B01G353200.1	Wheat	plastid	87.64	88.3
TraesCS6A01G094600.1	Wheat	plastid	84.64	88.28
TraesCS1B01G317500.1	Wheat	plastid	50.56	88.24
TraesCS7A01G238400.1	Wheat	plastid	87.64	87.97
TraesCS7B01G103400.1	Wheat	plastid	87.64	87.97
TraesCS6D01G088600.1	Wheat	plastid	87.27	87.59
TraesCS6A01G094300.1	Wheat	plastid	87.27	87.59
TraesCS6A01G094100.1	Wheat	plastid	87.27	87.59
TraesCS6A01G093700.1	Wheat	plastid	87.27	87.59
TraesCS1B01G388500.1	Wheat	plastid	86.89	87.55
TraesCS1D01G375000.1	Wheat	plastid	78.28	87.45
TraesCS5B01G462900.1	Wheat	plastid	66.67	87.25
PGSC0003DMT400034902	Potato	plastid	42.7	87.02
TraesCS1B01G388300.1	Wheat	plastid	86.14	86.79
TraesCS7D01G199500.1	Wheat	plastid	85.02	85.34
TraesCS7A01G237100.1	Wheat	plastid	84.64	84.96
TraesCS6B01G122600.1	Wheat	plastid	84.64	84.96
TraesCS6D01G088700.1	Wheat	plastid	73.03	84.78
GSMUA_Achr4P33040_001	Banana	plastid, unclear	78.65	79.55
TraesCS6A01G094500.1	Wheat	plastid	88.02	77.05
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	87.64	71.56
TraesCS6A01G094400.1	Wheat	plastid	88.76	71.17
TraesCS1D01G375200.1	Wheat	plastid	40.45	70.13
GSMUA_AchrUn_...	Banana	plastid	58.8	67.97
GSMUA_Achr1P08770_001	Banana	plastid, unclear	59.93	66.39
KXG33266	Sorghum	extracellular	47.94	55.41
GSMUA_Achr3P02780_001	Banana	plastid	46.44	42.76
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	23.22	42.47
GSMUA_Achr6P12670_001	Banana	plasma membrane	43.07	41.22
GSMUA_Achr10P...	Banana	plastid	42.32	39.24
GSMUA_Achr6P31940_001	Banana	plastid	33.71	37.34
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	34.08	37.14
GSMUA_Achr6P20660_001	Banana	mitochondrion	28.46	37.07
GSMUA_Achr9P02810_001	Banana	plastid	33.71	37.04
GSMUA_Achr2P06350_001	Banana	unclear	33.33	36.93
GSMUA_Achr9P27480_001	Banana	mitochondrion	43.07	35.71
GSMUA_Achr7P13020_001	Banana	plastid	33.33	32.72
GSMUA_Achr2P14960_001	Banana	plastid	30.34	32.27
GSMUA_Achr4P24090_001	Banana	unclear	30.34	32.14
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	29.96	32.13
GSMUA_Achr3P04110_001	Banana	plastid	32.58	31.75
GSMUA_Achr10P...	Banana	unclear	16.1	28.86
GSMUA_Achr9P18200_001	Banana	plastid	14.61	28.47
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	9.74	27.37

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G09300_001
EnsemblPlants:GSMUA_Achr2P09300_001	EnsemblPlants:GSMUA_Achr2T09300_001	InterPro:IPR023329	UniProt:M0S6H1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF55	SUPFAM:SSF103511	UniParc:UPI000295DBAB	SEG:seg	:	:

Description

Chlorophyll a-b binding protein 3C, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G09300_001]

Coordinates

chr2:+:12971808..12972746

Molecular Weight (calculated)

28235.8 Da

IEP (calculated)

5.098

GRAVY (calculated)

0.033

Length

267 amino acids

Sequence
(BLAST)

001: MAATMALSSP SLAGKAVKLA PSASDVLGEG RVTMRKSTAK AKPAAASGSP WYGPDRVKYL GPFSGEPPSY LTGEFPGDYG WDTAGLSADP ETFAKNRELE
101: VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGSQIF SEGGLDYLGN PSLIHAQSIL AIWACQVILM GAVEGYRIAG GPLGEVTDPL YPGGSFDPLG
201: LADDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP LENLADHLAD PVNNNAWAYA TNFVPGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.