Factsheet for GSMUA_Achr3P04110_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046786_P001	Maize	plastid	83.58	85.77
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	28.83	83.16
KXG20345	Sorghum	plastid	80.29	83.02
Os02t0197600-01	Rice	plastid	77.74	79.18
TraesCS6D01G152700.1	Wheat	golgi	75.91	77.32
TraesCS6B01G191500.1	Wheat	plastid	75.91	77.32
TraesCS6A01G159800.1	Wheat	plastid	75.91	77.32
GSMUA_Achr2P14960_001	Banana	plastid	37.96	41.43
GSMUA_Achr6P20660_001	Banana	mitochondrion	30.66	40.98
GSMUA_Achr4P24090_001	Banana	unclear	37.23	40.48
GSMUA_Achr7P13020_001	Banana	plastid	37.23	37.5
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	33.58	36.95
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	17.88	36.84
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	17.88	36.84
GSMUA_Achr2P06350_001	Banana	unclear	31.75	36.1
GSMUA_Achr6P31940_001	Banana	plastid	31.02	35.27
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	18.25	34.25
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	30.29	33.88
GSMUA_Achr4P33040_001	Banana	plastid, unclear	32.48	33.71
GSMUA_Achr9P18200_001	Banana	plastid	16.79	33.58
GSMUA_AchrUn_...	Banana	plastid	28.1	33.33
GSMUA_Achr6P12670_001	Banana	plasma membrane	33.21	32.62
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	31.75	32.58
GSMUA_Achr9P02810_001	Banana	plastid	28.83	32.51
GSMUA_Achr1P08770_001	Banana	plastid, unclear	27.74	31.54
GSMUA_Achr3P02780_001	Banana	plastid	33.21	31.38
GSMUA_Achr10P...	Banana	plastid	32.48	30.9
GSMUA_Achr4P07890_001	Banana	plastid	17.52	30.19
GSMUA_Achr9P27480_001	Banana	mitochondrion	31.75	27.02
GSMUA_Achr10P...	Banana	unclear	14.23	26.17

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G04110_001
EnsemblPlants:GSMUA_Achr3P04110_001	EnsemblPlants:GSMUA_Achr3T04110_001	InterPro:IPR023329	UniProt:M0SBM9	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI000295FB8A	SEG:seg	:	:

Description

Chlorophyll a-b binding protein 8, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G04110_001]

Coordinates

chr3:-:2617136..2618379

Molecular Weight (calculated)

29738.7 Da

IEP (calculated)

9.386

GRAVY (calculated)

-0.123

Length

274 amino acids

Sequence
(BLAST)

001: MATQAFLSSV EAGRQLLGGR PLRSAPSRSL GSSRKASFAV RAASTPPVKQ GADRQLWFAS KQSLTYLDGS LPGDYGFDPL GLSDPEGTGG FIEPKWLAYG
101: EVINGRYAML GAVGAIAPEI FGKLGWIPPE TALPWFKTGV FPPAGTYNYW ADPYTLFVLE MALMGFAEHR RFQDWANPGS MGKQYFLGLE KWLGGSGNPI
201: YPGGPLFNPL GFGKDEKSMN DLKLKEVKNG RLAMLAILGY FAQAALTGVG PFQNLLDHLA DPVHNNILTS FKFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.