Factsheet for GSMUA_Achr8P03720_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, unclear, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

unclear: 20177697
plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	54.69	91.78
GSMUA_Achr9P02810_001	Banana	plastid	85.31	86.01
VIT_08s0007g02190.t01	Wine grape	plastid	82.86	59.36
GSMUA_Achr2P06350_001	Banana	unclear	39.59	40.25
GSMUA_Achr6P31940_001	Banana	plastid	39.18	39.83
GSMUA_Achr6P20660_001	Banana	mitochondrion	29.8	35.61
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	19.18	35.34
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	19.18	35.34
GSMUA_Achr2P14960_001	Banana	plastid	35.51	34.66
GSMUA_Achr4P24090_001	Banana	unclear	35.51	34.52
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	37.14	34.08
GSMUA_Achr4P33040_001	Banana	plastid, unclear	35.92	33.33
GSMUA_Achr9P18200_001	Banana	plastid	17.96	32.12
GSMUA_Achr7P13020_001	Banana	plastid	35.51	31.99
GSMUA_AchrUn_...	Banana	plastid	29.8	31.6
GSMUA_Achr4P07890_001	Banana	plastid	20.41	31.45
GSMUA_Achr1P08770_001	Banana	plastid, unclear	30.61	31.12
GSMUA_Achr6P12670_001	Banana	plasma membrane	35.1	30.82
GSMUA_Achr3P02780_001	Banana	plastid	36.33	30.69
GSMUA_Achr3P04110_001	Banana	plastid	33.88	30.29
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	30.61	30.12
GSMUA_Achr10P...	Banana	plastid	35.1	29.86
GSMUA_Achr10P...	Banana	unclear	16.73	27.52
GSMUA_Achr9P27480_001	Banana	mitochondrion	35.1	26.71
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	6.94	17.89

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G03720_001
EnsemblPlants:GSMUA_Achr8P03720_001	EnsemblPlants:GSMUA_Achr8T03720_001	InterPro:IPR023329	UniProt:M0TMC5	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	TMHMM:TMhelix	UniParc:UPI000294DEB1	SEG:seg	:

Description

Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G03720_001]

Coordinates

chr8:-:2566701..2567804

Molecular Weight (calculated)

26700.2 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.036

Length

245 amino acids

Sequence
(BLAST)

001: MASSTAAATS PFLGTRLPEH SLAKAVGRFQ AQFGFGSKKS RPKKAKAPPT SDRPLWFPGA KTPEWLDGSL VGDYGFDPFG LGRPVFGLQR FRECELIHGR
101: WAMLATLGAL VVEWLTGVTW QDAGKVELVE GSSYLGLPLP FNITTLIWIE VLVIGYIEFQ RNAELDPEKR LYPGGKYFDP LGLAADPEKK ASLQLAEIKH
201: GRLAMVAFLG FAVQAAVTGK GPLNNWATHL SDPLHTTIID TFSSS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.