Factsheet for GSMUA_Achr6P20660_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	91.71	75.5
CDY43936	Canola	plastid	77.56	62.11
KRH06319	Soybean	nucleus, plastid	81.46	61.85
Bra014433.1-P	Field mustard	plastid	77.07	61.72
CDX89120	Canola	plastid	77.07	61.72
TraesCS2B01G220100.1	Wheat	golgi, plastid	76.59	61.57
TraesCS2D01G200700.1	Wheat	plastid	76.59	61.57
PGSC0003DMT400037285	Potato	extracellular, vacuole	46.83	61.54
Solyc10g006230.2.1	Tomato	plastid	80.98	61.48
TraesCS2A01G187200.1	Wheat	plastid	77.07	61.48
AT3G61470.1	Thale cress	plastid	77.07	61.48
Os07t0577600-01	Rice	plastid	78.54	61.22
VIT_01s0010g03620.t01	Wine grape	plastid	80.49	60.89
Zm00001d006663_P001	Maize	plastid	76.59	60.38
KXG36552	Sorghum	plastid	77.07	60.08
KRH47742	Soybean	nucleus	81.95	59.57
Bra003451.1-P	Field mustard	plastid	73.66	58.3
CDY51572	Canola	plastid	73.17	57.92
Zm00001d021906_P001	Maize	plastid	75.61	57.41
HORVU2Hr1G036960.4	Barley	plastid	74.63	54.26
KRH68993	Soybean	plastid	75.61	50.32
GSMUA_Achr9P18200_001	Banana	plastid	30.24	45.26
GSMUA_Achr2P14960_001	Banana	plastid	46.83	38.25
AT5G28450.1	Thale cress	plastid	31.22	36.99
GSMUA_Achr4P24090_001	Banana	unclear	44.39	36.11
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	22.44	34.59
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	22.44	34.59
GSMUA_Achr2P06350_001	Banana	unclear	38.05	32.37
GSMUA_Achr6P31940_001	Banana	plastid	37.07	31.54
GSMUA_Achr4P07890_001	Banana	plastid	24.39	31.45
GSMUA_Achr7P13020_001	Banana	plastid	41.46	31.25
GSMUA_Achr3P04110_001	Banana	plastid	40.98	30.66
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	35.61	29.8
GSMUA_Achr9P02810_001	Banana	plastid	35.12	29.63
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	37.07	28.46
GSMUA_AchrUn_...	Banana	plastid	31.71	28.14
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	19.51	27.4
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	12.68	27.37
GSMUA_Achr1P08770_001	Banana	plastid, unclear	31.71	26.97
GSMUA_Achr4P33040_001	Banana	plastid, unclear	34.63	26.89
GSMUA_Achr6P12670_001	Banana	plasma membrane	35.12	25.81
GSMUA_Achr3P02780_001	Banana	plastid	35.12	24.83
GSMUA_Achr10P...	Banana	plastid	34.15	24.31
GSMUA_Achr9P27480_001	Banana	mitochondrion	35.61	22.67
GSMUA_Achr10P...	Banana	unclear	13.17	18.12

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G20660_001
EnsemblPlants:GSMUA_Achr6P20660_001	EnsemblPlants:GSMUA_Achr6T20660_001	InterPro:IPR023329	UniProt:M0T8R4	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI0002956524	SEG:seg	:	:

Description

Chlorophyll a-b binding protein 7, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G20660_001]

Coordinates

chr6:-:15346678..15348038

Molecular Weight (calculated)

22223.8 Da

IEP (calculated)

9.591

GRAVY (calculated)

0.056

Length

205 amino acids

Sequence
(BLAST)

001: MLLPCSQKNG AALAATKASF LGGGRKVRQG KWATKTARRA FSVSAAAVPE RPLWFPGSTP PPWLDGSLPG DFGFDPLGLG SDPESLRWNQ QAEIVHCRWA
101: MLGAAGIFIP EFLTKIGILN TPSWYTAGQL EYFTDTTTLF VIELILIGWA EGRRTKEIKN GRLAMLAVMG AWFQAIYTGT GPIDNLFAHL ADPGHATVFA
201: AFTPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.