Factsheet for GSMUA_AchrUn_randomP28100_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 4
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	76.71	93.33
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	91.78	54.69
GSMUA_Achr9P02810_001	Banana	plastid	90.41	54.32
KRH65776	Soybean	nucleus, plastid	94.52	47.59
KRH75874	Soybean	mitochondrion, nucleus, plastid	94.52	47.59
Bra029732.1-P	Field mustard	plastid	92.47	46.88
CDY44667	Canola	plastid	92.47	46.88
CDY04834	Canola	plastid	91.78	46.69
Solyc09g014520.2.1	Tomato	plastid	91.1	46.67
Os07t0558400-01	Rice	plasma membrane, plastid	92.47	46.55
Bra028906.1-P	Field mustard	plastid	91.78	46.53
TraesCS2D01G209900.1	Wheat	plastid	91.1	46.5
TraesCS2A01G206200.1	Wheat	plastid	91.1	46.5
TraesCS2B01G233400.1	Wheat	plastid	91.1	46.5
CDY53084	Canola	plastid	91.78	46.37
AT3G08940.2	Thale cress	plastid	91.1	46.34
EER99537	Sorghum	plastid	91.1	46.18
PGSC0003DMT400021871	Potato	plastid	89.73	45.96
AT5G01530.1	Thale cress	plastid	91.1	45.86
Zm00001d021763_P001	Maize	plastid	91.1	45.7
Zm00001d006587_P001	Maize	plastid	91.1	45.7
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	30.82	33.83
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	30.82	33.83
HORVU5Hr1G013200.1	Barley	plastid	54.79	28.27
GSMUA_Achr10P...	Banana	unclear	28.77	28.19
GSMUA_Achr2P06350_001	Banana	unclear	45.21	27.39
GSMUA_Achr6P31940_001	Banana	plastid	44.52	26.97
GSMUA_Achr4P07890_001	Banana	plastid	25.34	23.27
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	42.47	23.22
GSMUA_Achr2P14960_001	Banana	plastid	39.04	22.71
GSMUA_Achr4P33040_001	Banana	plastid, unclear	39.73	21.97
GSMUA_Achr4P24090_001	Banana	unclear	37.67	21.83
GSMUA_Achr7P13020_001	Banana	plastid	36.99	19.85
GSMUA_Achr6P20660_001	Banana	mitochondrion	27.4	19.51
GSMUA_AchrUn_...	Banana	plastid	30.14	19.05
GSMUA_Achr6P12670_001	Banana	plasma membrane	36.3	19.0
GSMUA_Achr3P04110_001	Banana	plastid	34.25	18.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	11.64	17.89
GSMUA_Achr1P08770_001	Banana	plastid, unclear	29.45	17.84
GSMUA_Achr10P...	Banana	plastid	34.93	17.71
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	30.14	17.67
GSMUA_Achr3P02780_001	Banana	plastid	34.93	17.59
GSMUA_Achr9P27480_001	Banana	mitochondrion	36.99	16.77
GSMUA_Achr9P18200_001	Banana	plastid	4.79	5.11

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_AchrUn_randomG28100_001
EnsemblPlants:GSMUA_AchrUn_randomP28100_001	EnsemblPlants:GSMUA_AchrUn_randomT28100_001	InterPro:IPR023329	UniProt:M0UD18	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI0002950D37	:	:	:

Description

Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28100_001]

Coordinates

chrchrUn_random:-:136799243..136800104

Molecular Weight (calculated)

15917.2 Da

IEP (calculated)

4.826

GRAVY (calculated)

0.167

Length

146 amino acids

Sequence
(BLAST)

001: MLATLGALTV EWLTGVTWQD AGKVELVDGS SYLGQPLPFN ITTLIWIEVL VIGYIEFQRN AELDPEKRLY PGGKYFDPLG LASDPEKKAT LQLAEIKHAR
101: LAMVAFLGFA VQAAATGKGP LNNWATHLSD PLHTTIIDNV FFASSS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.