Factsheet for GSMUA_Achr9P27480_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G177700.1	Wheat	plastid	69.25	71.94
Bra008265.1-P	Field mustard	plastid	72.36	71.91
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	68.94	71.61
CDY45980	Canola	plastid	72.05	71.6
PGSC0003DMT400025715	Potato	plastid	70.5	71.38
Os09t0296800-01	Rice	plastid	71.12	71.34
TraesCS5B01G175000.1	Wheat	plastid	68.32	71.2
EER96508	Sorghum	plastid	69.25	71.02
TraesCS5D01G182000.1	Wheat	plastid	68.32	70.97
CDY20401	Canola	plastid	71.74	70.64
Zm00001d020002_P002	Maize	plastid	68.94	70.48
VIT_18s0122g00430.t01	Wine grape	plastid	71.43	69.49
AT1G76570.1	Thale cress	plastid	70.5	69.42
KRH06016	Soybean	plastid	70.19	68.07
Solyc04g082920.2.1	Tomato	plastid	44.72	66.06
KRH17548	Soybean	cytosol, peroxisome, plastid	33.23	52.97
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	18.63	45.11
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	18.63	45.11
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	35.71	43.07
GSMUA_Achr4P33040_001	Banana	plastid, unclear	35.09	42.8
GSMUA_Achr6P31940_001	Banana	plastid	28.88	38.59
GSMUA_AchrUn_...	Banana	plastid	27.64	38.53
GSMUA_Achr1P08770_001	Banana	plastid, unclear	27.95	37.34
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	16.77	36.99
GSMUA_Achr2P06350_001	Banana	unclear	27.64	36.93
GSMUA_Achr6P12670_001	Banana	plasma membrane	31.68	36.56
GSMUA_Achr3P02780_001	Banana	plastid	32.3	35.86
GSMUA_Achr4P07890_001	Banana	plastid	17.7	35.85
GSMUA_Achr6P20660_001	Banana	mitochondrion	22.67	35.61
GSMUA_Achr10P...	Banana	plastid	31.68	35.42
GSMUA_Achr9P02810_001	Banana	plastid	26.71	35.39
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	26.71	35.1
GSMUA_Achr3P04110_001	Banana	plastid	27.02	31.75
GSMUA_Achr7P13020_001	Banana	plastid	26.4	31.25
GSMUA_Achr2P14960_001	Banana	plastid	23.91	30.68
GSMUA_Achr9P18200_001	Banana	plastid	13.04	30.66
GSMUA_Achr4P24090_001	Banana	unclear	23.91	30.56
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	23.6	30.52
GSMUA_Achr10P...	Banana	unclear	12.11	26.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	7.45	25.26

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765
GO:GO:0009987	GO:GO:0010218	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G27480_001	EnsemblPlants:GSMUA_Achr9P27480_001	EnsemblPlants:GSMUA_Achr9T27480_001	InterPro:IPR023329
UniProt:M0U405	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	UniParc:UPI000294E6F2
SEG:seg	:	:	:	:	:

Description

Putative Chlorophyll a-b binding protein type 1 member F3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G27480_001]

Coordinates

chr9:-:31664610..31674677

Molecular Weight (calculated)

35686.8 Da

IEP (calculated)

9.129

GRAVY (calculated)

0.148

Length

322 amino acids

Sequence
(BLAST)

001: MAMLLPRPVS SLAPRVPRYL LPSRLNSRRR KSVYVVQASW QELAGVLIFS AIPFTAVKAV ANSSLGEKLR RQLSETKRDA VEKSLRFKAL AQKAREASSW
101: YGRERPCWLG PIPYKYPSYL TGELPGDYGF DVAGLGKDPV ALQKYFNFEI LHARWAMLAS IGVIVPELLE ELGFVHFVEP VWWKVGYAKL QGDTLDYLGI
201: PGLHIVGGQG VIIIAICQAL LMVGPEYARY CGIEALEPLG LYLPGDINYP GGLLFDPLGL SADPVAFEEL KVKEIKNGRL AMVAWIGFYL QAAVTGKGPI
301: QNLFEHVSDP LHNNVTAFIK LM

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.