CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008265.1-P	Field mustard	plastid	99.07	99.07
CDY20401	Canola	plastid	97.22	96.33
AT1G76570.1	Thale cress	plastid	89.2	88.38
PGSC0003DMT400025715	Potato	plastid	74.07	75.47
VIT_18s0122g00430.t01	Wine grape	plastid	76.85	75.23
EER96508	Sorghum	plastid	70.06	72.29
KRH06016	Soybean	plastid	74.07	72.29
GSMUA_Achr9P27480_001	Banana	mitochondrion	71.6	72.05
TraesCS5A01G177700.1	Wheat	plastid	68.52	71.61
TraesCS5B01G175000.1	Wheat	plastid	67.9	71.2
Solyc04g082920.2.1	Tomato	plastid	47.84	71.1
Zm00001d020002_P002	Maize	plastid	68.83	70.79
TraesCS5D01G182000.1	Wheat	plastid	67.59	70.65
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	67.59	70.65
Os09t0296800-01	Rice	plastid	68.21	68.85
KRH17548	Soybean	cytosol, peroxisome, plastid	34.57	55.45
CDY30369	Canola	plastid	21.91	46.71
CDX83967	Canola	extracellular, vacuole	3.09	43.48
CDY17250	Canola	mitochondrion, plastid	21.3	42.33
CDX84647	Canola	plastid	34.57	42.11
CDX79562	Canola	plastid	34.57	42.11
CDX99866	Canola	plastid	34.57	41.95
CDX84316	Canola	plastid	34.26	41.73
CDY17247	Canola	plastid	34.26	41.73
CDY35271	Canola	plastid	34.26	41.57
CDY43676	Canola	plastid	34.26	41.57
CDY26306	Canola	plastid	34.26	41.57
CDY66768	Canola	plastid	34.26	41.57
CDX90218	Canola	plastid	34.26	41.57
CDY17248	Canola	plastid	33.95	41.35
CDY66572	Canola	cytosol, extracellular, plastid	18.21	41.26
CDY43198	Canola	plastid	33.95	41.2
CDX98158	Canola	plastid	33.95	41.2
CDY20039	Canola	plastid	33.64	41.13
CDY14320	Canola	plastid	29.63	41.03
CDY52238	Canola	plastid	29.63	41.03
CDY00149	Canola	plastid	33.64	40.98
CDY49770	Canola	plastid	33.64	40.98
CDY13732	Canola	plastid	33.64	40.98
CDX83726	Canola	plastid	33.64	40.98
CDY03989	Canola	plastid	33.64	40.98
CDY18320	Canola	plastid	29.32	40.6
CDY15050	Canola	plastid	33.02	40.38
CDX93077	Canola	plastid	33.02	40.38
CDY60092	Canola	plastid	33.02	38.08
CDY05098	Canola	plastid	32.72	37.86
CDX90755	Canola	plastid	32.72	37.86
CDX78277	Canola	plastid	27.16	36.51
CDX67613	Canola	plastid	27.16	36.51
CDY07517	Canola	plastid	27.16	36.51
CDX73435	Canola	plastid	26.85	36.1
CDY28778	Canola	plastid	27.47	34.77
CDX84315	Canola	plastid	34.26	33.74
CDY17055	Canola	mitochondrion, plastid	26.23	32.95
CDY43213	Canola	mitochondrion, plastid	25.93	32.56
CDX89120	Canola	plastid	25.31	32.03
CDY43936	Canola	plastid	25.31	32.03
CDY47410	Canola	plastid	24.69	31.75
CDX99044	Canola	plastid	24.69	31.75
CDY51572	Canola	plastid	25.31	31.66
CDX86864	Canola	plastid	20.06	31.1
CDY47581	Canola	plastid	25.93	30.77
CDY03835	Canola	plastid	25.93	30.77
CDY04834	Canola	plastid	27.16	30.66
CDY57375	Canola	plastid	25.62	30.63
CDY12903	Canola	plastid	25.62	30.63
CDY44667	Canola	plastid	27.16	30.56
CDY53084	Canola	plastid	27.16	30.45
CDY15020	Canola	plastid	25.31	30.26
CDX83783	Canola	plastid	24.69	30.08
CDX96677	Canola	plastid	24.38	29.7
CDY26347	Canola	plastid	23.15	29.41
CDX74808	Canola	plastid	24.38	28.62
CDY20518	Canola	plastid	24.38	28.62
CDX96833	Canola	plastid	22.84	28.57
CDY33376	Canola	plastid	22.53	28.29
CDY35042	Canola	plastid	22.53	28.29
CDX83966	Canola	plastid	19.44	27.63
CDX81735	Canola	plastid	21.91	27.41
CDY52865	Canola	plastid	21.91	27.41
CDY61708	Canola	plastid	20.37	18.86

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	GO:A0A078I528	UniProt:A0A078I528	EnsemblPlants:CDY45980	ProteinID:CDY45980
ProteinID:CDY45980.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00083086001
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	UniParc:UPI0004EEECBB
SEG:seg	:	:	:	:	:

Description

BnaA02g18160DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078I528]

Coordinates

chrLK032645:-:25904..27699

Molecular Weight (calculated)

36060.8 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.017

Length

324 amino acids

Sequence
(BLAST)

001: MALFQDMLSL SSTFHSLPRR LLPEPPRRRL AVKRPRSICR ASWQELAGVL VFSAIPFTAV KAIANSSLGE SLRRRLAEKK KEAVENASRF NAKAQKARAD
101: SKWYGQKRPR WFGPIPYDYP TYLTGELPGD YGFDIAGLGK DRLNFDKYFN FEILHARWAM LAALGALIPE VFDLTGAFHF VEPVWWRVGY SKLQGETLDY
201: LGIPGLHVAG SQGVIVIAIC QALLMVGPEY ARYCGIEALE PLGIYLPGDI NYPGGTLFDP LNLSQDPVAF EDLKVKEIKN GRLAMVAWLG FYAQAAVTGK
301: GPVQNLVDHV SDPLHNNLLA ILQI

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.