CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17247	Canola	plastid	79.03	97.74
CDY17248	Canola	plastid	79.03	97.74
Bra005425.1-P	Field mustard	plastid	78.72	97.37
CDX84316	Canola	plastid	78.72	97.37
CDX84647	Canola	plastid	78.42	96.99
CDX79562	Canola	plastid	78.12	96.62
CDY35271	Canola	plastid	78.12	96.25
CDX90218	Canola	plastid	78.12	96.25
CDY30369	Canola	plastid	44.38	96.05
CDY43676	Canola	plastid	77.51	95.51
CDY26306	Canola	plastid	77.51	95.51
CDY66768	Canola	plastid	77.51	95.51
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	38.6	95.49
CDY43198	Canola	plastid	76.6	94.38
CDX99866	Canola	plastid	76.6	94.38
CDX98158	Canola	plastid	75.68	93.26
CDY17250	Canola	mitochondrion, plastid	39.82	80.37
CDY15050	Canola	plastid	60.49	75.09
CDX93077	Canola	plastid	60.49	75.09
CDY13732	Canola	plastid	60.18	74.44
CDY20039	Canola	plastid	59.88	74.34
CDY49770	Canola	plastid	59.88	74.06
CDY00149	Canola	plastid	59.57	73.68
CDY03989	Canola	plastid	59.57	73.68
CDX83726	Canola	plastid	59.27	73.31
CDY66572	Canola	cytosol, extracellular, plastid	30.4	69.93
CDY14320	Canola	plastid	47.72	67.09
CDY18320	Canola	plastid	47.42	66.67
CDY52238	Canola	plastid	47.42	66.67
CDY28778	Canola	plastid	46.81	60.16
CDY05098	Canola	plastid	34.65	40.71
CDX90755	Canola	plastid	34.35	40.36
CDY60092	Canola	plastid	34.04	39.86
CDX73435	Canola	plastid	29.18	39.83
CDX67613	Canola	plastid	28.88	39.42
CDX78277	Canola	plastid	28.88	39.42
CDY07517	Canola	plastid	28.88	39.42
CDX83967	Canola	extracellular, vacuole	2.74	39.13
CDY43936	Canola	plastid	27.96	35.94
CDX89120	Canola	plastid	27.66	35.55
CDY51572	Canola	plastid	27.05	34.36
CDY45980	Canola	plastid	33.74	34.26
CDY44667	Canola	plastid	29.79	34.03
CDY53084	Canola	plastid	29.79	33.91
CDY20401	Canola	plastid	33.43	33.64
CDX86864	Canola	plastid	21.28	33.49
CDX83783	Canola	plastid	27.05	33.46
CDX96677	Canola	plastid	27.05	33.46
CDY04834	Canola	plastid	29.18	33.45
CDY57375	Canola	plastid	27.05	32.84
CDY12903	Canola	plastid	27.05	32.84
CDX99044	Canola	plastid	24.92	32.54
CDY47410	Canola	plastid	24.92	32.54
CDY15020	Canola	plastid	26.75	32.47
CDY47581	Canola	plastid	26.75	32.23
CDY03835	Canola	plastid	26.75	32.23
CDX74808	Canola	plastid	26.44	31.52
CDY26347	Canola	plastid	24.32	31.37
CDX81735	Canola	plastid	24.62	31.27
CDX96833	Canola	plastid	24.32	30.89
CDY52865	Canola	plastid	24.32	30.89
CDY20518	Canola	plastid	25.84	30.8
CDY43213	Canola	mitochondrion, plastid	24.01	30.62
CDY17055	Canola	mitochondrion, plastid	23.71	30.23
CDY35042	Canola	plastid	23.4	29.84
CDY33376	Canola	plastid	23.4	29.84
CDX83966	Canola	plastid	19.76	28.51
CDY61708	Canola	plastid	22.49	21.14

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	GO:A0A078D5A4	EnsemblPlants:CDX84315	ProteinID:CDX84315	ProteinID:CDX84315.1
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00141424001
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF55	SUPFAM:SSF103511	UniParc:UPI0004EB69B5

Description

BnaC04g10770D

Coordinates

chrLK031836:-:1772992..1774771

Molecular Weight (calculated)

34653.7 Da

IEP (calculated)

7.617

GRAVY (calculated)

0.076

Length

329 amino acids

Sequence
(BLAST)

001: MAASTMALSS PALAGKAVKL APAASEVFGT GRVTMRKTTK PAGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: AADPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGNHSKI LDGLPKVHWA SGLVLGVGSI ASLVRFPWGG
301: VLYAMLSVSA QAGPGPRKGL RPKTRTLPG

Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)

001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Arabidopsis Description

LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.