CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018144.1-P	Field mustard	plastid	100.0	100.0
CDY47410	Canola	plastid	100.0	100.0
AT3G47470.1	Thale cress	plastid	94.84	95.22
Solyc06g069730.2.1	Tomato	plastid	86.11	86.8
Solyc03g115900.2.1	Tomato	plastid	86.11	86.45
PGSC0003DMT400050232	Potato	plastid	86.11	86.45
PGSC0003DMT400083158	Potato	plastid	85.71	86.4
VIT_17s0000g06350.t01	Wine grape	plastid	85.32	85.32
GSMUA_Achr4P24090_001	Banana	unclear	85.32	85.32
GSMUA_Achr2P14960_001	Banana	plastid	84.52	84.86
KRH63318	Soybean	plastid	84.52	84.52
KRH54568	Soybean	nucleus, plastid	84.52	84.52
Zm00001d032197_P001	Maize	plastid	77.38	78.95
Zm00001d050403_P001	Maize	plastid	76.19	78.69
KXG25214	Sorghum	plastid	76.98	77.29
Os08t0435900-01	Rice	mitochondrion	74.21	76.64
TraesCS5B01G227900.1	Wheat	plastid	73.81	75.92
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	73.81	75.92
HORVU5Hr1G066280.1	Barley	plastid	73.81	75.92
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	73.41	75.51
CDY43936	Canola	plastid	49.6	48.83
CDX89120	Canola	plastid	49.21	48.44
CDY51572	Canola	plastid	48.41	47.1
CDY43213	Canola	mitochondrion, plastid	42.46	41.47
CDY17055	Canola	mitochondrion, plastid	42.06	41.09
CDX83783	Canola	plastid	42.06	39.85
CDX96677	Canola	plastid	42.06	39.85
CDX83967	Canola	extracellular, vacuole	3.57	39.13
CDY26347	Canola	plastid	38.1	37.65
CDX78277	Canola	plastid	35.71	37.34
CDY07517	Canola	plastid	35.71	37.34
CDX73435	Canola	plastid	35.71	37.34
CDX67613	Canola	plastid	35.71	37.34
CDY12903	Canola	plastid	40.08	37.27
CDY57375	Canola	plastid	40.08	37.27
CDY66572	Canola	cytosol, extracellular, plastid	21.03	37.06
CDY03835	Canola	plastid	40.08	37.0
CDY47581	Canola	plastid	40.08	37.0
CDY15020	Canola	plastid	39.68	36.9
CDY30369	Canola	plastid	19.84	32.89
CDY14320	Canola	plastid	30.16	32.48
CDY52238	Canola	plastid	30.16	32.48
CDY18320	Canola	plastid	30.16	32.48
CDY44667	Canola	plastid	36.51	31.94
CDY53084	Canola	plastid	36.11	31.49
CDY43198	Canola	plastid	33.33	31.46
CDX79562	Canola	plastid	32.94	31.2
CDX84647	Canola	plastid	32.94	31.2
CDY66768	Canola	plastid	32.94	31.09
CDY35271	Canola	plastid	32.94	31.09
CDY43676	Canola	plastid	32.94	31.09
CDX98158	Canola	plastid	32.94	31.09
CDY26306	Canola	plastid	32.94	31.09
CDX99866	Canola	plastid	32.94	31.09
CDX90218	Canola	plastid	32.94	31.09
CDY04834	Canola	plastid	35.32	31.01
CDY60092	Canola	plastid	34.52	30.96
CDY17248	Canola	plastid	32.54	30.83
CDY17250	Canola	mitochondrion, plastid	19.84	30.67
CDX93077	Canola	plastid	32.14	30.57
CDY15050	Canola	plastid	32.14	30.57
CDY17247	Canola	plastid	32.14	30.45
CDX84316	Canola	plastid	32.14	30.45
CDX74808	Canola	plastid	33.33	30.43
CDX90755	Canola	plastid	33.73	30.36
CDY05098	Canola	plastid	33.73	30.36
CDY20039	Canola	plastid	31.75	30.19
CDY49770	Canola	plastid	31.75	30.08
CDY13732	Canola	plastid	31.75	30.08
CDX83726	Canola	plastid	31.75	30.08
CDY00149	Canola	plastid	31.75	30.08
CDY20518	Canola	plastid	32.54	29.71
CDY03989	Canola	plastid	31.35	29.7
CDX81735	Canola	plastid	30.16	29.34
CDY33376	Canola	plastid	29.76	29.07
CDX96833	Canola	plastid	29.76	28.96
CDY52865	Canola	plastid	29.76	28.96
CDY35042	Canola	plastid	29.37	28.68
CDX83966	Canola	plastid	24.6	27.19
CDY28778	Canola	plastid	26.19	25.78
CDX86864	Canola	plastid	21.03	25.36
CDX84315	Canola	plastid	32.54	24.92
CDY45980	Canola	plastid	31.75	24.69
CDY20401	Canola	plastid	31.75	24.46
CDY61708	Canola	plastid	27.38	19.71

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	GO:A0A078I8Z6	UniProt:A0A078I8Z6	EnsemblPlants:CDX99044	ProteinID:CDX99044
ProteinID:CDX99044.1	ProteinID:CDY47410.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00107175001
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	UniParc:UPI000253F45C
SEG:seg	:	:	:	:	:

Description

BnaA06g17350DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078I8Z6]

Coordinates

chrLK031908:+:19050..20746

Molecular Weight (calculated)

27807.2 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.133

Length

252 amino acids

Sequence
(BLAST)

001: MATVTTQASA SIFRPCTSKP RFLTGSSGRL NRDLSFKSIG SSSSKTASFK VEAKKGEWLP GLASPGYLNG SLAGDNGFDP LGLAEDPENL KWFIQAELVN
101: GRWAMLGVAG MLLPEVFTKI GIINVPEWYD AGKEQYFASS STLFVIEFIL FHYVEIRRWQ DIKNPGSVNQ DPIFKQYSLP PNEVGYPGGI FNPLNFAPTL
201: EAKEKELANG RLAMLAFLGF VIQHNVTGKG PFENLLQHLS DPWHNTIVQT FS

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.