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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
  • mitochondrion 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid, secretory
BaCelLo:secretory
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68161
CDX69273
CDX73122
CDX75624
CDX80928
CDX85860
CDY01120
CDY11316
CDY20340
CDY24170
CDY29727
CDY36943
CDY42827
CDY43444
CDY45402
CDY47326
CDY51514
CDY55390
CDY61202
CDY67729

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G29910.1 CDX68161 AT1G74890.1 18642946
AT1G29910.1 CDX73122 AT1G74890.1 18642946
AT1G29910.1 CDX85860 AT1G74890.1 18642946
AT1G29910.1 CDY45402 AT1G74890.1 18642946
AT1G29910.1 CDY24170 AT3G47620.1 21798944
AT1G29910.1 CDY36943 AT3G47620.1 21798944
AT1G29920.1 CDX68161 AT1G74890.1 18642946
AT1G29920.1 CDX73122 AT1G74890.1 18642946
AT1G29920.1 CDX85860 AT1G74890.1 18642946
AT1G29920.1 CDY45402 AT1G74890.1 18642946
AT1G29920.1 CDY20340 AT3G44880.1 22366162
AT1G29920.1 CDY29727 AT3G44880.1 22366162
AT1G29920.1 CDY01120 AT4G13250.1 22366162
AT1G29920.1 CDY47326 AT4G13250.1 22366162
AT1G29920.1 CDY67729 AT4G13250.1 22366162
AT1G29920.1 CDX69273 AT4G37000.1 22366162
AT1G29920.1 CDX75624 AT4G37000.1 22366162
AT1G29920.1 CDX80928 AT5G04900.1 22366162
AT1G29920.1 CDY11316 AT5G04900.1 22366162
AT1G29920.1 CDY43444 AT5G04900.1 22366162
AT1G29930.1 CDY42827 AT2G42580.1 19000166
AT1G29930.1 CDY51514 AT2G42580.1 19000166
AT1G29930.1 CDY55390 AT2G42580.1 19000166
AT1G29930.1 CDY61202 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana cytosol, extracellular, plastid 76.97 87.97
CDY17250 Canola mitochondrion, plastid 84.21 78.53
CDY66572 Canola cytosol, extracellular, plastid 54.61 58.04
CDX79562 Canola plastid 98.03 56.02
CDX84647 Canola plastid 98.03 56.02
Bra030181.1-P Field mustard plastid 98.03 55.81
CDY43676 Canola plastid 98.03 55.81
CDY26306 Canola plastid 98.03 55.81
CDY66768 Canola plastid 98.03 55.81
CDY35271 Canola plastid 97.37 55.43
CDX99866 Canola plastid 97.37 55.43
CDX90218 Canola plastid 97.37 55.43
CDY17247 Canola plastid 96.71 55.26
CDX84316 Canola plastid 96.71 55.26
AT2G34420.1 Thale cress plastid 96.05 55.09
AT2G34430.1 Thale cress plastid 96.05 54.89
CDY17248 Canola plastid 96.05 54.89
CDY43198 Canola plastid 96.05 54.68
CDX98158 Canola plastid 96.05 54.68
AT1G29920.1 Thale cress plastid 95.39 54.31
AT1G29910.1 Thale cress plastid 95.39 54.31
AT1G29930.1 Thale cress plastid 95.39 54.31
CDY15050 Canola plastid 81.58 46.79
CDX93077 Canola plastid 81.58 46.79
CDY20039 Canola plastid 80.92 46.42
CDY00149 Canola plastid 80.92 46.24
CDY03989 Canola plastid 80.92 46.24
CDY49770 Canola plastid 80.92 46.24
CDY13732 Canola plastid 80.92 46.24
CDX83726 Canola plastid 79.61 45.49
CDX84315 Canola plastid 96.05 44.38
CDX83967 Canola extracellular, vacuole 5.92 39.13
CDY28778 Canola plastid 65.13 38.67
CDY14320 Canola plastid 57.89 37.61
CDY18320 Canola plastid 57.24 37.18
CDY52238 Canola plastid 56.58 36.75
CDX78277 Canola plastid 40.79 25.73
CDX73435 Canola plastid 40.79 25.73
CDY07517 Canola plastid 40.79 25.73
CDX67613 Canola plastid 40.79 25.73
CDY05098 Canola plastid 46.05 25.0
CDX90755 Canola plastid 46.05 25.0
CDY60092 Canola plastid 45.39 24.56
CDY26347 Canola plastid 37.5 22.35
CDY43936 Canola plastid 37.5 22.27
CDX89120 Canola plastid 37.5 22.27
CDY45980 Canola plastid 46.71 21.91
CDY51572 Canola plastid 36.84 21.62
CDY20401 Canola plastid 46.05 21.41
CDY04834 Canola plastid 40.13 21.25
CDY44667 Canola plastid 40.13 21.18
CDY53084 Canola plastid 40.13 21.11
CDY57375 Canola plastid 37.5 21.03
CDY15020 Canola plastid 37.5 21.03
CDY12903 Canola plastid 37.5 21.03
CDY47581 Canola plastid 37.5 20.88
CDY03835 Canola plastid 37.5 20.88
CDY43213 Canola mitochondrion, plastid 34.21 20.16
CDX99044 Canola plastid 32.89 19.84
CDY47410 Canola plastid 32.89 19.84
CDY17055 Canola mitochondrion, plastid 33.55 19.77
CDX96677 Canola plastid 34.21 19.55
CDX83783 Canola plastid 34.21 19.55
CDX74808 Canola plastid 33.55 18.48
CDY20518 Canola plastid 32.89 18.12
CDX96833 Canola plastid 29.61 17.37
CDY35042 Canola plastid 28.95 17.05
CDY33376 Canola plastid 28.95 17.05
CDY52865 Canola plastid 28.95 16.99
CDX81735 Canola plastid 28.95 16.99
CDY61708 Canola plastid 34.87 15.14
CDX83966 Canola plastid 20.39 13.6
CDX86864 Canola plastid 17.11 12.44
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10GO:A0A078GYY9UniProt:A0A078GYY9EnsemblPlants:CDY30369ProteinID:CDY30369
ProteinID:CDY30369.1InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0003674GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009522GO:GO:0009523GO:GO:0009535
GO:GO:0009536GO:GO:0009579GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00045057001InterPro:IPR023329
PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF25SUPFAM:SSF103511UniParc:UPI0004EE6A9F:
Description
BnaA09g09080DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078GYY9]
Coordinates
chrLK032252:+:493043..493517
Molecular Weight (calculated)
16042.4 Da
IEP (calculated)
4.417
GRAVY (calculated)
0.239
Length
152 amino acids
Sequence
(BLAST)
001: MLGALGCVFP KLLARNGVKF GEADCEGGLD YLGNPSLVHA QSILAIWATQ VILMGAVEGY RVAGEGPLGE AEDLLYPGGS FDPLGLATDP EAFAELKVKE
101: IKNGRLAMFS MFGFFVQAIV TGKGPLENLA DHLADPVNNN AWAFATNFVP GK
Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.