CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80928	plastid
CDY11316	plastid
CDY43444	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	CDX80928	AT5G04900.1	22366162
AT4G13250.1	CDY11316	AT5G04900.1	22366162
AT4G13250.1	CDY43444	AT5G04900.1	22366162
AT4G13250.1	CDX80928	AT5G04900.1	22366162
AT4G13250.1	CDY11316	AT5G04900.1	22366162
AT4G13250.1	CDY43444	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01120	Canola	cytosol, mitochondrion	97.76	93.76
AT4G13250.1	Thale cress	cytosol	91.06	90.32
CDY67729	Canola	cytosol	54.67	86.22
GSMUA_Achr7P10870_001	Banana	mitochondrion	63.82	70.09
KRH48384	Soybean	plastid	69.72	66.73
KRH39291	Soybean	plastid	68.5	65.44
VIT_11s0016g03890.t01	Wine grape	plastid	68.29	64.99
PGSC0003DMT400077668	Potato	cytosol	63.41	64.2
Solyc07g024000.2.1	Tomato	plastid	62.4	63.43
HORVU3Hr1G030890.1	Barley	plastid	64.43	63.4
TraesCS3D01G159800.1	Wheat	mitochondrion	64.23	63.33
TraesCS3B01G179100.1	Wheat	mitochondrion	64.02	62.87
Os01t0227100-01	Rice	mitochondrion	64.02	62.5
EES02213	Sorghum	plastid	64.84	62.3
Zm00001d039312_P001	Maize	plastid	63.62	61.25
TraesCS3A01G151900.1	Wheat	mitochondrion	54.67	61.14
GSMUA_Achr10P...	Banana	cytosol	65.04	60.15
KXG33129	Sorghum	cytosol	6.1	41.67
OQU77869	Sorghum	mitochondrion	6.5	41.03
CDY11316	Canola	plastid	22.56	31.81
CDX80928	Canola	plastid	22.15	31.41
CDY43444	Canola	plastid	16.87	31.2

Protein Annotations

EnsemblPlants:CDY47326	EnsemblPlantsGene:GSBRNA2T00087177001	Gene3D:3.40.50.720	GO:A0A078IBW3	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	ncoils:Coil	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19
PFAM:PF00106	PRINTS:PR00081	ProteinID:CDY47326	ProteinID:CDY47326.1	SEG:seg	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI0004EECBC8	UniProt:A0A078IBW3	MapMan:7.12.6.6.4.1	:	:

Description

BnaCnng14630DBnaCnng14630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBW3]

Coordinates

chrLK032709:+:102781..105562

Molecular Weight (calculated)

54279.8 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.141

Length

492 amino acids

Sequence
(BLAST)

001: MTTITKLQVY PRCLEHRLGF MDHQRVGSRL NCRYNRVYVH RCEGDSGEKK VERRRKREKL KGNGLWSSLK SGVLGVSKLG FLSKDEYNQK IEKLEMVFSS
101: IAVQIARYIV TMTSTGAILL IGFQLSGGDS SMNSLVWYSW LGGVIIGTMT GANMVLEDHY RAGPRNVVIT GSTRGLGKAL AREFLLSGDR VIVTSRSSES
201: VDMTVKELEQ NLKEIMSNAS ESARKKLADA KVVGIACDVC KPEDVEKLSN FAVKELGSIN IWINNAGTNK GQESFMNLIV STNLIGSILC TRGAMEVMSR
301: QNNGGHIFNM DGAGSGGSST PLTAVYGSTK CGLRQFHSSI VKESQKTKVG LHTASPGMVL TELLLSGSSI KNKQMFNIIC ELPETVARTL VPRMRIVKGS
401: GKSVNYLTPP RILLAIVTSW LRRSRWFDDQ GRALYAAEAD RLRNWAENRT RFSLTDAMEM YTENTWVSVF SLSVVCAFII LSSTTPSSFP GT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.