CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG37915	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	KXG37915	AT5G04900.1	22366162
AT4G13250.1	KXG37915	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77869	Sorghum	mitochondrion	58.33	53.85
CDY67729	Canola	cytosol	43.06	9.94
EES02213	Sorghum	plastid	55.56	7.81
GSMUA_Achr7P10870_001	Banana	mitochondrion	47.22	7.59
Os01t0227100-01	Rice	mitochondrion	50.0	7.14
KXG37915	Sorghum	plastid	33.33	7.04
TraesCS3D01G159800.1	Wheat	mitochondrion	48.61	7.01
HORVU3Hr1G030890.1	Barley	plastid	48.61	7.0
TraesCS3B01G179100.1	Wheat	mitochondrion	48.61	6.99
TraesCS3A01G151900.1	Wheat	mitochondrion	41.67	6.82
AT4G13250.1	Thale cress	cytosol	44.44	6.45
GSMUA_Achr10P...	Banana	cytosol	47.22	6.39
PGSC0003DMT400077668	Potato	cytosol	41.67	6.17
CDY47326	Canola	cytosol, mitochondrion	41.67	6.1
Bra034882.1-P	Field mustard	cytosol	41.67	6.04
Solyc07g024000.2.1	Tomato	plastid	40.28	5.99
CDY01120	Canola	cytosol, mitochondrion	41.67	5.85
KRH48384	Soybean	plastid	41.67	5.84
Bra032697.1-P	Field mustard	cytosol, mitochondrion	41.67	5.67
VIT_11s0016g03890.t01	Wine grape	plastid	40.28	5.61
KRH39291	Soybean	plastid	38.89	5.44

Protein Annotations

EnsemblPlants:KXG33129	EnsemblPlantsGene:SORBI_3003G258500	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	ProteinID:KXG33129	ProteinID:KXG33129.1
TMHMM:TMhelix	UniParc:UPI00081ADF10	UniProt:A0A1B6Q5D0	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr3:+:59644242..59646315

Molecular Weight (calculated)

7844.6 Da

IEP (calculated)

8.239

GRAVY (calculated)

0.474

Length

72 amino acids

Sequence
(BLAST)

1: MLSHAKVVGT TCDVCKPEDV KTLVKFSINE PGSVDIWTVT GIASWGVPTL AGITHWTIAV SRLLSRFYVL NL

Best Arabidopsis Sequence Match ( AT4G13250.2 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGRG LGKALAREFL LSGDRVIVTS RSSESVDMTV
201: KELEQNLKEI MSNASESARK KLSDAKVVGI ACDVCKPEDV EKLSNFAVKE LGSINIWINN AGTNKGFRPL LEFTEEDITQ IVSTNLIGSI LCTRGAMDVM
301: SRQHSGGHIF NMDGAGSGGS STPLTAVYGS TKCGLRQFHG SIVKESQKTN VGLHTASPGM VLTELLLSGS SIKNKQMFNI ICELPETVAR TLVPRMRVVK
401: GSGKAVNYLT PPRILLAIVT SWLRRGRWFD DQGRALYAAE ADRLRNWAEN RTRLSLTDAM EMYTENTWVS VFSLSVVCAF IILQSTTPSS FPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.