CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13102	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	KRH13102	AT5G04900.1	22366162
AT4G13250.1	KRH13102	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39291	Soybean	plastid	94.55	94.37
GSMUA_Achr7P10870_001	Banana	mitochondrion	66.93	76.79
CDY67729	Canola	cytosol	46.3	76.28
VIT_11s0016g03890.t01	Wine grape	plastid	73.35	72.92
AT4G13250.1	Thale cress	cytosol	68.29	70.77
PGSC0003DMT400077668	Potato	cytosol	66.34	70.16
Solyc07g024000.2.1	Tomato	plastid	65.76	69.83
Bra034882.1-P	Field mustard	cytosol	67.51	69.82
CDY47326	Canola	cytosol, mitochondrion	66.73	69.72
CDY01120	Canola	cytosol, mitochondrion	69.07	69.2
Os01t0227100-01	Rice	mitochondrion	67.12	68.45
HORVU3Hr1G030890.1	Barley	plastid	66.34	68.2
TraesCS3D01G159800.1	Wheat	mitochondrion	66.15	68.14
EES02213	Sorghum	plastid	67.51	67.77
TraesCS3B01G179100.1	Wheat	mitochondrion	65.95	67.66
Zm00001d039312_P001	Maize	plastid	66.93	67.32
Bra032697.1-P	Field mustard	cytosol, mitochondrion	69.07	67.11
TraesCS3A01G151900.1	Wheat	mitochondrion	57.2	66.82
GSMUA_Achr10P...	Banana	cytosol	68.68	66.35
KXG33129	Sorghum	cytosol	5.84	41.67
OQU77869	Sorghum	mitochondrion	5.45	35.9
KRH13102	Soybean	plastid	23.54	34.67

Protein Annotations

EntrezGene:100784978	Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	EMBL:ACUP02004225	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G085700
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0034256	GO:GO:0055114	UniProt:I1KIQ4	EnsemblPlants:KRH48384	ProteinID:KRH48384	ProteinID:KRH48384.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	InterPro:SDR_fam
SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI00023384D1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:7911140..7915003

Molecular Weight (calculated)

56325.5 Da

IEP (calculated)

9.747

GRAVY (calculated)

-0.052

Length

514 amino acids

Sequence
(BLAST)

001: MATVVKLHVV PECLNQQKTR SLRRGFGSCP SPGVLGFGHY CDRFSVKVCR AFRTEDGGDV KEKKLRNLKK NEEKTKRESG FWSSLKSILL RNFMVGSKSD
101: DEYRQAVAKV EGLLSSIAIQ IGRYIVTMMS TGVILSIGFQ MSGGDSQMDA LIWYSWLGGV IIGTMIGANM VLEEHCRAGP RNVVITGSTR GLGKALAREF
201: LLSGDRVIVT SRSPESVQAT IKELEENLKE GIANAVGSSL TKLSHAKVVG IACDVCEPHD VQRLANFAVK ELGHIDIWIN NAGTNKGFRP LLQFSDEDIK
301: QIVSTNLVGS ILCTREAMRV MRNQAIAGHI FNMDGAGSGG SSTPLTAVYG STKCGLRQLQ GSLLKECKRS KVGVHTASPG MVLTDLLLSG STVQNRQMFN
401: IICELPETVA RTLVPRMRVV KGTGKAINYL TPPRILLALV TAWLRRGRWF DDQGRALYAA EADRLRNWAE DRARFSFTDA MEMYTENTWL SVFSLSVVCA
501: FIILSSTGSN LPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.