CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80928	plastid
CDY11316	plastid
CDY43444	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	CDX80928	AT5G04900.1	22366162
AT4G13250.1	CDY11316	AT5G04900.1	22366162
AT4G13250.1	CDY43444	AT5G04900.1	22366162
AT4G13250.1	CDX80928	AT5G04900.1	22366162
AT4G13250.1	CDY11316	AT5G04900.1	22366162
AT4G13250.1	CDY43444	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034882.1-P	Field mustard	cytosol	95.51	59.96
AT4G13250.1	Thale cress	cytosol	89.74	56.45
CDY01120	Canola	cytosol, mitochondrion	90.38	54.97
CDY47326	Canola	cytosol, mitochondrion	86.22	54.67
GSMUA_Achr7P10870_001	Banana	mitochondrion	74.36	51.79
PGSC0003DMT400077668	Potato	cytosol	72.44	46.5
HORVU3Hr1G030890.1	Barley	plastid	74.36	46.4
KRH48384	Soybean	plastid	76.28	46.3
TraesCS3D01G159800.1	Wheat	mitochondrion	74.04	46.29
Solyc07g024000.2.1	Tomato	plastid	71.79	46.28
VIT_11s0016g03890.t01	Wine grape	plastid	76.6	46.23
TraesCS3B01G179100.1	Wheat	mitochondrion	74.04	46.11
EES02213	Sorghum	plastid	74.36	45.31
KRH39291	Soybean	plastid	74.68	45.24
Os01t0227100-01	Rice	mitochondrion	73.08	45.24
Zm00001d039312_P001	Maize	plastid	73.08	44.62
GSMUA_Achr10P...	Banana	cytosol	74.36	43.61
KXG33129	Sorghum	cytosol	9.94	43.06
TraesCS3A01G151900.1	Wheat	mitochondrion	59.62	42.27
OQU77869	Sorghum	mitochondrion	9.62	38.46
CDY11316	Canola	plastid	28.53	25.5
CDX80928	Canola	plastid	27.88	25.07
CDY43444	Canola	plastid	19.55	22.93

Protein Annotations

EnsemblPlants:CDY67729	EnsemblPlantsGene:GSBRNA2T00066093001	Gene3D:3.40.50.720	GO:A0A078JLP9	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
ncoils:Coil	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	PFAM:PF00106	PRINTS:PR00081	ProteinID:CDY67729
ProteinID:CDY67729.1	SUPFAM:SSF51735	UniParc:UPI0004EE349E	UniProt:A0A078JLP9	MapMan:7.12.6.6.4.1	:

Description

BnaAnng25090DBnaAnng25090D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JLP9]

Coordinates

chrLK036449:-:7208..8982

Molecular Weight (calculated)

34284.3 Da

IEP (calculated)

8.276

GRAVY (calculated)

-0.079

Length

312 amino acids

Sequence
(BLAST)

001: FVWISFCEIS SESVDMTVKE LQQNLKEIMS KASESDRKKL GFAKVVGIAC DVCKPEDVER LSSFAVEELG SINIWINNAG TNKGFRPLLD FTEEDIKQIV
101: STNLIGSILC TRGAMEVMSR QDNGGHIFNM DGAGSGGSST PLTAVYGSTK CGLRQFHGSV AKESQKTKVG LHTASPGMVL TELLLSGSSI KNKQMFNIIC
201: ELPETVARTL VPRMRVVKGS GKSVNYLTPP RILLAIVTSW LRRGRWFDDQ GRALYAAEAD RLRNWAENRT RLSLTDAMEM YTENTWVSVF SLSVVCAFII
301: VSSTTPSSFP GT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.