Factsheet for HORVU3Hr1G030890.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G159800.1	Wheat	mitochondrion	98.4	98.6
TraesCS3A01G151900.1	Wheat	mitochondrion	86.6	98.41
TraesCS3B01G179100.1	Wheat	mitochondrion	97.8	97.6
Os01t0227100-01	Rice	mitochondrion	89.6	88.89
EES02213	Sorghum	plastid	87.6	85.55
Zm00001d039312_P001	Maize	plastid	86.8	84.93
GSMUA_Achr7P10870_001	Banana	mitochondrion	70.2	78.35
CDY67729	Canola	cytosol	46.4	74.36
GSMUA_Achr10P...	Banana	cytosol	73.0	68.61
VIT_11s0016g03890.t01	Wine grape	plastid	69.4	67.12
KRH48384	Soybean	plastid	68.2	66.34
PGSC0003DMT400077668	Potato	cytosol	63.8	65.64
KRH39291	Soybean	plastid	67.4	65.44
AT4G13250.1	Thale cress	cytosol	64.8	65.32
Solyc07g024000.2.1	Tomato	plastid	62.8	64.88
CDY47326	Canola	cytosol, mitochondrion	63.4	64.43
CDY01120	Canola	cytosol, mitochondrion	65.4	63.74
Bra034882.1-P	Field mustard	cytosol	63.2	63.58
Bra032697.1-P	Field mustard	cytosol, mitochondrion	65.4	61.81
KXG33129	Sorghum	cytosol	7.0	48.61
OQU77869	Sorghum	mitochondrion	6.4	41.03

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	EMBL:AK356173	ncoils:Coil	UniProt:F2CX20	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009536	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0019538	GO:GO:0055114	EnsemblPlantsGene:HORVU3Hr1G030890
EnsemblPlants:HORVU3Hr1G030890.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19
InterPro:SDR_fam	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0002004BC2	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CX20]

Coordinates

chrchr3H:+:151256533..151261590

Molecular Weight (calculated)

54124.2 Da

IEP (calculated)

8.907

GRAVY (calculated)

-0.073

Length

500 amino acids

Sequence
(BLAST)

001: MAAAVVHLSV HARIRRSPEA VVSQACHRPS LLRCRAFKQE AGGDGENKPS SPPNEPRKRR KGPLYTLKAA MQGLAGSRSA AAEVYGGQYE LAVEKAEEIF
101: FSVATQVGRY VITMMSTGVV LAVGFQLSGG DSQTDALIWY SWLGGVIIGT MLGANSVLEE HCKAGPRNVV ITGSTRGLGK ALAREFLLAG DHVVIASRSP
201: ESVLQTINEL EENIQEGLSV AKKKQRETLL QAKVVGTSCD VCKPEDVKKL VNFAVGELGS IDIWINNAGT NKGFRPLVNF SDEDITQIVS TNLVGSLLCT
301: REAMDVMQYQ EQGGHVFNMD GAGSGGSSTP LTAVYGSTKC GLRQFQASLM KESRRSKVGV HTASPGMVLT DLLLSGSSLQ NKQMFNIICE LPETVARTLV
401: PRMRVVKGSG KAVNYLTPPR ILLALVTAWV RRGRWFDEEG RAVYAAEADR IRNWAESRTR FSFTDAMEMY TENTWVSVFS LSVVCAFIML SSSGGPFPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.