CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG37915	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	KXG37915	AT5G04900.1	22366162
AT4G13250.1	KXG37915	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039312_P001	Maize	plastid	94.53	94.72
Os01t0227100-01	Rice	mitochondrion	89.65	91.07
TraesCS3D01G159800.1	Wheat	mitochondrion	86.13	88.38
TraesCS3A01G151900.1	Wheat	mitochondrion	75.78	88.18
TraesCS3B01G179100.1	Wheat	mitochondrion	85.74	87.62
HORVU3Hr1G030890.1	Barley	plastid	85.55	87.6
GSMUA_Achr7P10870_001	Banana	mitochondrion	70.12	80.13
CDY67729	Canola	cytosol	45.31	74.36
GSMUA_Achr10P...	Banana	cytosol	72.66	69.92
PGSC0003DMT400077668	Potato	cytosol	64.26	67.7
KRH48384	Soybean	plastid	67.77	67.51
VIT_11s0016g03890.t01	Wine grape	plastid	67.97	67.31
Solyc07g024000.2.1	Tomato	plastid	62.7	66.32
AT4G13250.1	Thale cress	cytosol	64.06	66.13
KRH39291	Soybean	plastid	66.21	65.83
CDY47326	Canola	cytosol, mitochondrion	62.3	64.84
Bra034882.1-P	Field mustard	cytosol	62.5	64.39
CDY01120	Canola	cytosol, mitochondrion	64.26	64.13
Bra032697.1-P	Field mustard	cytosol, mitochondrion	64.26	62.19
KXG33129	Sorghum	cytosol	7.81	55.56
OQU77869	Sorghum	mitochondrion	7.81	51.28
KXG37915	Sorghum	plastid	24.41	36.66

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	EntrezGene:8081366	UniProt:C5XK97	ncoils:Coil	EnsemblPlants:EES02213
ProteinID:EES02213	ProteinID:EES02213.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009536
GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0034256	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314
PANTHER:PTHR24314:SF19	InterPro:SDR_fam	EnsemblPlantsGene:SORBI_3003G010600	SUPFAM:SSF51735	unigene:Sbi.9026	TMHMM:TMhelix
UniParc:UPI0001A84DFC	RefSeq:XP_002457093.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:901706..907724

Molecular Weight (calculated)

55300.4 Da

IEP (calculated)

9.579

GRAVY (calculated)

-0.148

Length

512 amino acids

Sequence
(BLAST)

001: MAAAAAAAVA HLSVHGRLRR SPEHRPSTSS SSAPAHRPSL LRCRAFKQET DGGGGDRDSD PSEPDARKRR KGPLYKLKAA IQGLAGSRSA AAEVYGGEHQ
101: YQRAVEKAEE IFFSVATQLG RYAITMMSSG VVLGVGFQLS GGDSQMNELI WYSWLGGVII GTMIGANSVL EEHCKAGPRN VVITGSTRGL GKALAREFLL
201: SGDHVVITSR SPESVLQTIT ELEENIQEGL SVAKKKERKI LSHAKVVGTA CDVCKPEDVK KLVNFAINEL GSVDIWINNA GTNKGFRPLV TFSDDDITQI
301: VSTNLVGSLL CTREAMNVMQ YQEKGGHIFN MDGAGSGGSS TPLTAVYGST KCGLRQFQGS LLKESRRSKV GVHTASPGMV LTDLLLSGSS IRNKQMFNLI
401: CELPETVART LVPRMRVVKG SGKAINYLTP PRILLALVTA WVRRGRWFDD EGRAVYAAEA DRIRNWAESR ARFSFTDAME MYTENTWVSV FSLSVVCAFI
501: ILSSSGGPLP GT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.