CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013651_P001	Maize	plastid	82.4	82.4
TraesCS6B01G357800.1	Wheat	plastid	76.83	76.16
TraesCS4A01G299400.1	Wheat	plastid	76.54	75.87
Os03t0654600-01	Rice	plastid	76.25	75.8
TraesCS4D01G012100.1	Wheat	plastid	76.25	75.36
TraesCS4D01G053400.2	Wheat	plastid	70.97	72.02
TraesCS4A01G261200.1	Wheat	plastid	68.62	71.12
CDX80928	Canola	plastid	66.86	65.71
CDY11316	Canola	plastid	67.16	65.62
Bra005827.1-P	Field mustard	plastid	66.57	65.42
VIT_01s0010g00590.t01	Wine grape	plastid	65.98	65.22
GSMUA_Achr2P03080_001	Banana	plastid	66.57	63.94
KRH13102	Soybean	plastid	65.4	63.9
Solyc05g032660.2.1	Tomato	plastid	64.22	63.29
AT5G04900.1	Thale cress	plastid	64.52	63.22
CDY43444	Canola	plastid	43.7	56.02
KXG33129	Sorghum	cytosol	7.04	33.33
PGSC0003DMT400033934	Potato	plastid	9.97	30.09
EES02213	Sorghum	plastid	36.66	24.41
OQU77869	Sorghum	mitochondrion	5.57	24.36

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	UniProt:A0A1B6QJ22	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0034256	GO:GO:0055114	EnsemblPlants:KXG37915	ProteinID:KXG37915
ProteinID:KXG37915.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	InterPro:SDR_fam	EnsemblPlantsGene:SORBI_3001G150600	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI00081ACD1D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:12095283..12101215

Molecular Weight (calculated)

37031.8 Da

IEP (calculated)

10.352

GRAVY (calculated)

-0.194

Length

341 amino acids

Sequence
(BLAST)

001: MAATATVAVH LPLRGPARAP SGPSVAAATR FRGRQERRGL AATGGRGLAR FRAEAFSGGG GGGRRDPMVP PYNVLITGST KGIGYALARK FLEAGDNVII
101: CSRSAQKVES VVGDLKKEYG VQHVWGTVCD VRDGKDVKAL VEFARDKLKH IDLWINNAGS NAYTYKPLVE TSDEALMEII TTNTLGLMIC CREAINMMRN
201: QPRGGHIFNL DGAGSDGRPT PRFAAYGATK RSVVHLTKSL QAELQMNEVN NVMVHNLSPG MVTTDLLMSG ATTKQAKFFI NILAEPPDVV ADYLVPNVRA
301: IPTNQSMKPT YIRFLTGLKA YSRIFSRLAF GARRNKYVTE D

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.