Factsheet for TraesCS4D01G012100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G299400.1	Wheat	plastid	96.52	96.8
TraesCS4D01G053400.2	Wheat	plastid	88.99	91.37
TraesCS6B01G357800.1	Wheat	plastid	84.06	84.3
Os03t0654600-01	Rice	plastid	80.87	81.34
KXG37915	Sorghum	plastid	75.36	76.25
Zm00001d013651_P001	Maize	plastid	75.07	75.95
Bra005827.1-P	Field mustard	plastid	67.54	67.15
CDX80928	Canola	plastid	67.25	66.86
Solyc05g032660.2.1	Tomato	plastid	66.96	66.76
CDY11316	Canola	plastid	67.25	66.48
VIT_01s0010g00590.t01	Wine grape	plastid	66.38	66.38
GSMUA_Achr2P03080_001	Banana	plastid	68.12	66.2
AT5G04900.1	Thale cress	plastid	66.38	65.8
KRH13102	Soybean	plastid	65.8	65.04
CDY43444	Canola	plastid	44.64	57.89
PGSC0003DMT400033934	Potato	plastid	10.43	31.86
TraesCS3D01G159800.1	Wheat	mitochondrion	36.81	25.45

Protein Annotations

EnsemblPlants:TraesCS4D01G012100.1	EnsemblPlantsGene:TraesCS4D01G012100	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS	PANTHER:PTHR24314
PANTHER:PTHR24314:SF15	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	SEG:seg
SUPFAM:SSF51735	TIGR:cd05233	MapMan:7.12.6.6.4.2	:	:	:

Description

No Description!

Coordinates

chr4D:-:5675862..5679908

Molecular Weight (calculated)

37716.3 Da

IEP (calculated)

10.029

GRAVY (calculated)

-0.260

Length

345 amino acids

Sequence
(BLAST)

001: MATVTASLPL RAAARAGPAP SRAPPSDAAF FPGRPWQRGL AARGRPREPA GWFRAEALSG GGGGGPPRRE PMAPPYNVLI TGSTKGIGYA LARKFLKAGD
101: NVVICSRSAE RVESVRNDLK KEFGEQHVWG TVCDVREGKD VKALVDFARD KLEYIDIWIN NAGSNAYSYK PLVETSDEAL IEVITTNTLG LMLCCREAIN
201: MMWKQPRGGH IFNIDGAGSD GRPTPRFAAY GATKRSVVHL TKSLQAELQM NEVNNVVVHN LSPGMVTTDL LMSGATTKQA KFFINILAET PDVVADYLVP
301: NIREIPTNQS MKPTYIRFLT GLKAYSRIFS RIAFGARRNK YVAED

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.