Factsheet for TraesCS3D01G159800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G261200.1	plastid
TraesCS4A01G299400.1	plastid
TraesCS4D01G012100.1	plastid
TraesCS4D01G053400.2	plastid
TraesCS6B01G357800.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G13250.1	TraesCS6B01G357800.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G13250.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G13250.1	TraesCS6B01G357800.1	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G151900.1	Wheat	mitochondrion	87.78	99.55
TraesCS3B01G179100.1	Wheat	mitochondrion	99.0	98.6
HORVU3Hr1G030890.1	Barley	plastid	98.6	98.4
Os01t0227100-01	Rice	mitochondrion	90.38	89.48
EES02213	Sorghum	plastid	88.38	86.13
Zm00001d039312_P001	Maize	plastid	87.98	85.91
GSMUA_Achr7P10870_001	Banana	mitochondrion	70.34	78.35
CDY67729	Canola	cytosol	46.29	74.04
GSMUA_Achr10P...	Banana	cytosol	73.15	68.61
VIT_11s0016g03890.t01	Wine grape	plastid	69.34	66.92
KRH48384	Soybean	plastid	68.14	66.15
PGSC0003DMT400077668	Potato	cytosol	64.33	66.05
KRH39291	Soybean	plastid	67.33	65.24
AT4G13250.1	Thale cress	cytosol	64.73	65.12
Solyc07g024000.2.1	Tomato	plastid	62.93	64.88
CDY47326	Canola	cytosol, mitochondrion	63.33	64.23
CDY01120	Canola	cytosol, mitochondrion	65.33	63.55
Bra034882.1-P	Field mustard	cytosol	63.13	63.38
Bra032697.1-P	Field mustard	cytosol, mitochondrion	65.33	61.63
KXG33129	Sorghum	cytosol	7.01	48.61
OQU77869	Sorghum	mitochondrion	6.41	41.03
TraesCS4D01G012100.1	Wheat	plastid	25.45	36.81
TraesCS4D01G053400.2	Wheat	plastid	23.25	34.52

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009536	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016491	GO:GO:0019538
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	InterPro:SDR_fam
SUPFAM:SSF51735	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G159800	EnsemblPlants:TraesCS3D01G159800.1	TIGR:cd05233	:

Description

No Description!

Coordinates

chr3D:+:130498981..130503673

Molecular Weight (calculated)

54042.1 Da

IEP (calculated)

8.906

GRAVY (calculated)

-0.084

Length

499 amino acids

Sequence
(BLAST)

001: MAAAVVHLSV HGRLRRSPEA VVSQACHRPS LLRCRAFKQE AGGDDEKPSS PPNEPRKRRK GPLYTLKAAM QGLAGSRSAA AEVYGGQYEL AVEKAEEIFF
101: SVATQVGRYV ITMMSSGVVL AVGFQLSGGD SQTDALIWYS WLGGVIIGTM LGANSVLEEH CKAGPRNVVI TGSTRGLGKA LAREFLLSGD HVVIASRSPD
201: SVLQTINELE ENIQEGLSVA KKKQRETLLQ AKVVGTSCDV CKPEDVKKLV NFAVGELGSI DIWINNAGTN KGFRPLVNFS DEDITQIVST NLVGSLLCTR
301: EAMDVMQYQE KGGHVFNMDG AGSGGSSTPL TAVYGSTKCG LRQFQASLMK ESRRSKVGVH TASPGMVLTD LLLSGSSLQN KQMFNIICEL PETVARTLVP
401: RMRVVKGSGK AVNYLTPPRI LLALVTAWVR RGRWFDEEGR AVYAAEADRI RNWAESRTRF SFTDAMEMYT ENTWVSVFSL SVVCAFIMLS SSGGPFPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.