Factsheet for GSMUA_Achr7P10870_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P03080_001	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	GSMUA_Achr2P03080_001	AT5G04900.1	22366162
AT4G13250.1	GSMUA_Achr2P03080_001	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	90.85	76.5
CDY67729	Canola	cytosol	51.79	74.36
Os01t0227100-01	Rice	mitochondrion	80.13	71.23
TraesCS3D01G159800.1	Wheat	mitochondrion	78.35	70.34
HORVU3Hr1G030890.1	Barley	plastid	78.35	70.2
EES02213	Sorghum	plastid	80.13	70.12
TraesCS3B01G179100.1	Wheat	mitochondrion	78.12	69.86
Zm00001d039312_P001	Maize	plastid	79.46	69.67
TraesCS3A01G151900.1	Wheat	mitochondrion	67.63	68.86
VIT_11s0016g03890.t01	Wine grape	plastid	79.46	68.86
KRH48384	Soybean	plastid	76.79	66.93
PGSC0003DMT400077668	Potato	cytosol	71.65	66.05
KRH39291	Soybean	plastid	75.89	66.02
AT4G13250.1	Thale cress	cytosol	72.77	65.73
Solyc07g024000.2.1	Tomato	plastid	70.31	65.08
Bra034882.1-P	Field mustard	cytosol	70.98	63.98
CDY47326	Canola	cytosol, mitochondrion	70.09	63.82
CDY01120	Canola	cytosol, mitochondrion	72.54	63.35
Bra032697.1-P	Field mustard	cytosol, mitochondrion	72.54	61.44
KXG33129	Sorghum	cytosol	7.59	47.22
OQU77869	Sorghum	mitochondrion	7.14	41.03
GSMUA_Achr2P03080_001	Banana	plastid	26.34	33.24

Protein Annotations

EnsemblPlants:GSMUA_Achr7P10870_001	EnsemblPlants:GSMUA_Achr7T10870_001	EnsemblPlantsGene:GSMUA_Achr7G10870_001	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	PFAM:PF00106
PRINTS:PR00081	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0002953F0C	UniProt:M0TGH5	MapMan:7.12.6.6.4.1

Description

Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G10870_001]

Coordinates

chr7:+:8708561..8715766

Molecular Weight (calculated)

48940.5 Da

IEP (calculated)

9.670

GRAVY (calculated)

0.026

Length

448 amino acids

Sequence
(BLAST)

001: MQRLRWITVS YRKGPLYSLK SMLLRLSGSD SGPVGQNRKL VEKVEEIFFS FATQLGRYLV TMTSTGIILA IGFQLSGGDS QMNTLIWYSW LGGIIIGTMI
101: GANMVLEEHC KAGPRNVVIT GSTRGLGKAL AREFLLSGDR VVIASRSPES VHQTVEELRE NLKDGLAVSK NKARTNLSHA MVVGIACDVC KPEDVRKLAN
201: FAVDELGSVD IWINNAGTNK GFRPLLQFTD DDIDQIVSTN LVGSLLCTRE AIHIIGSQDK GGHIFNMDGA GSGGSSTPLT AVYGSTKCGL RQLQASLLKE
301: CKRSKVGVHT ASPGMVLTEL LLSGSSLRNK QMFNIICELP ETVARTLVPR MRVVKGSGKA INYLTPPRIL LALVTAWLRR GRWFDEQGRA LYAAEADRIR
401: NWAESRARFS VTDAMEMYAE NTWVSVFSLS VVCAFIILSS SGNAFHGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.