Factsheet for Zm00001d039312_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013651_P001	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	Zm00001d013651_P001	AT5G04900.1	22366162
AT4G13250.1	Zm00001d013651_P001	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02213	Sorghum	plastid	94.72	94.53
Os01t0227100-01	Rice	mitochondrion	89.24	90.48
TraesCS3D01G159800.1	Wheat	mitochondrion	85.91	87.98
TraesCS3A01G151900.1	Wheat	mitochondrion	75.73	87.95
TraesCS3B01G179100.1	Wheat	mitochondrion	85.52	87.23
HORVU3Hr1G030890.1	Barley	plastid	84.93	86.8
GSMUA_Achr7P10870_001	Banana	mitochondrion	69.67	79.46
CDY67729	Canola	cytosol	44.62	73.08
GSMUA_Achr10P...	Banana	cytosol	72.21	69.36
KRH48384	Soybean	plastid	67.32	66.93
PGSC0003DMT400077668	Potato	cytosol	63.21	66.46
VIT_11s0016g03890.t01	Wine grape	plastid	67.12	66.34
Solyc07g024000.2.1	Tomato	plastid	62.23	65.7
KRH39291	Soybean	plastid	65.95	65.44
AT4G13250.1	Thale cress	cytosol	63.01	64.92
CDY47326	Canola	cytosol, mitochondrion	61.25	63.62
Bra034882.1-P	Field mustard	cytosol	61.64	63.38
CDY01120	Canola	cytosol, mitochondrion	63.21	62.96
Bra032697.1-P	Field mustard	cytosol, mitochondrion	63.21	61.06
Zm00001d013651_P001	Maize	plastid	24.27	36.36

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	EMBL:BT066021	UniProt:C0PCK2	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009536	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0019538	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf
ProteinID:ONM28273.1	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	InterPro:SDR_fam
SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000194B27C	EnsemblPlantsGene:Zm00001d039312	EnsemblPlants:Zm00001d039312_P001	EnsemblPlants:Zm00001d039312_T001
SEG:seg	:	:	:	:	:

Description

non-yellow coloring1 non-yellow coloring1

Coordinates

chr3:-:1461989..1466446

Molecular Weight (calculated)

55296.4 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.119

Length

511 amino acids

Sequence
(BLAST)

001: MAAAAAAAVA HLSIHGRLRR SPEHRPSITT TTTSSSSSSA HRPSLLRCRA FKQEAGDGDP AEADARKRRK GPLYKLKAAI QGLAGSRSAA AEVYGGEYQY
101: QRAVEKAEEI FFSVTTQLGR YVITMMSSGV VLGVGFQLSG GDSQMNELIW YSWLGGVIIG TMIGANSVLE EHCKAGPRNV VITGSTRGLG KALAREFLLS
201: GDRVVITSRS PESVLQTIKE LEENIQEGLS VAKKKQRNIL SHAKVVGTDC DVCKPEDVKE LVNFAINELG SVDIWINNAG TNKGFRPLVT FSDDDITQIV
301: STNLVGSLLC TREAMNVMQY QEKGGHIFNM DGAGSGGSST PLTAVYGSTK CGLKQFQGSL LNESRRSKVG VHTASPGMVL TDLLLSGSSL RNKQMFNLIC
401: ELPETVARTL VPRMRVVKGS GKAINYLTPP RILLALVTAW VRRGRWFDDE GRAVYAAEAD RIRNWAESRA RFSFTDAMEM YTENTWVSVF SLSVVCAFII
501: LSSSGGPLPG T

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.