Factsheet for GSMUA_Achr10P26390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P03080_001	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	GSMUA_Achr2P03080_001	AT5G04900.1	22366162
AT4G13250.1	GSMUA_Achr2P03080_001	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P10870_001	Banana	mitochondrion	76.5	90.85
CDY67729	Canola	cytosol	43.61	74.36
Os01t0227100-01	Rice	mitochondrion	69.36	73.21
TraesCS3D01G159800.1	Wheat	mitochondrion	68.61	73.15
HORVU3Hr1G030890.1	Barley	plastid	68.61	73.0
VIT_11s0016g03890.t01	Wine grape	plastid	70.86	72.92
TraesCS3B01G179100.1	Wheat	mitochondrion	68.61	72.85
EES02213	Sorghum	plastid	69.92	72.66
Zm00001d039312_P001	Maize	plastid	69.36	72.21
TraesCS3A01G151900.1	Wheat	mitochondrion	59.02	71.36
KRH48384	Soybean	plastid	66.35	68.68
PGSC0003DMT400077668	Potato	cytosol	62.59	68.52
KRH39291	Soybean	plastid	65.79	67.96
Solyc07g024000.2.1	Tomato	plastid	61.47	67.56
AT4G13250.1	Thale cress	cytosol	61.65	66.13
Bra034882.1-P	Field mustard	cytosol	60.9	65.19
CDY47326	Canola	cytosol, mitochondrion	60.15	65.04
CDY01120	Canola	cytosol, mitochondrion	62.22	64.52
Bra032697.1-P	Field mustard	cytosol, mitochondrion	62.22	62.57
KXG33129	Sorghum	cytosol	6.39	47.22
OQU77869	Sorghum	mitochondrion	6.2	42.31
GSMUA_Achr2P03080_001	Banana	plastid	22.56	33.8

Protein Annotations

EnsemblPlants:GSMUA_Achr10P26390_001	EnsemblPlants:GSMUA_Achr10T26390_001	EnsemblPlantsGene:GSMUA_Achr10G26390_001	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	PFAM:PF00106
PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0002956255	UniProt:M0RLL3
MapMan:7.12.6.6.4.1	:	:	:	:	:

Description

Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G26390_001]

Coordinates

chr10:-:29975733..29981880

Molecular Weight (calculated)

58514.7 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.133

Length

532 amino acids

Sequence
(BLAST)

001: MATASAQLHL HLAADFFDHL GSKDVTRRIR GPRLRPRFDR NPATYDGLSF LGPRICRQRA IPPLPCRSFR SENSGEESDG RMAVVKEERE SRQLKRKGAL
101: YSFKSMLVTL SGSDSRPAGQ YRKYVEKTEE IFFSFITQLG RYLVTMMSTE VILATGFQLS GGDSQMNTLI WYSWLGGIII GTMIGANMVL EEHCKAGPRN
201: VVVTGSTRGL GKALAREFLL SGDRVVIASR SPESVHQTVE ELRENLKEGI SVSGNKARKN LSHAMVVGIA CDVCKPEDVR KLANFAVAEL GSVDIWINNA
301: GTNKGFRPLL QFTDDDIDQI VSTNLVGSLL CTREAIRVLG SQGKGGHIFN MDGAGSGGSS TPLTAVYGST KCGLRQLQAS LFKECKRSKV GVHTASPGMV
401: LTDLLLSGST LRNKQMFNII CELPETVART LVPRMRVVKG NGKAINYLTP PRILLALVTA WLRRGRWFDE QGRALYAAEA DRIRNWAESR ARFSFTDAME
501: MYAENTWVSV FSLSVVCAFI MLSSSGTAFP GT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.