CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG37915	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	KXG37915	AT5G04900.1	22366162
AT4G13250.1	KXG37915	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33129	Sorghum	cytosol	53.85	58.33
CDY67729	Canola	cytosol	38.46	9.62
EES02213	Sorghum	plastid	51.28	7.81
TraesCS3A01G151900.1	Wheat	mitochondrion	41.03	7.27
GSMUA_Achr7P10870_001	Banana	mitochondrion	41.03	7.14
AT4G13250.1	Thale cress	cytosol	42.31	6.65
Os01t0227100-01	Rice	mitochondrion	42.31	6.55
CDY47326	Canola	cytosol, mitochondrion	41.03	6.5
TraesCS3D01G159800.1	Wheat	mitochondrion	41.03	6.41
HORVU3Hr1G030890.1	Barley	plastid	41.03	6.4
TraesCS3B01G179100.1	Wheat	mitochondrion	41.03	6.39
GSMUA_Achr10P...	Banana	cytosol	42.31	6.2
PGSC0003DMT400077668	Potato	cytosol	38.46	6.17
CDY01120	Canola	cytosol, mitochondrion	39.74	6.04
Bra032697.1-P	Field mustard	cytosol, mitochondrion	39.74	5.86
Bra034882.1-P	Field mustard	cytosol	37.18	5.84
Solyc07g024000.2.1	Tomato	plastid	34.62	5.58
KXG37915	Sorghum	plastid	24.36	5.57
KRH48384	Soybean	plastid	35.9	5.45
KRH39291	Soybean	plastid	32.05	4.85
VIT_11s0016g03890.t01	Wine grape	plastid	32.05	4.84

Protein Annotations

EnsemblPlants:OQU77869	EnsemblPlantsGene:SORBI_3009G115100	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	ProteinID:OQU77869	ProteinID:OQU77869.1
UniParc:UPI000B8BA4F7	UniProt:A0A1Z5R2W4	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:45622334..45623652

Molecular Weight (calculated)

8710.7 Da

IEP (calculated)

9.313

GRAVY (calculated)

-0.013

Length

78 amino acids

Sequence
(BLAST)

1: MVKIQCLLLQ HRIYSTFQLY IQEGSSVAKN KERKMLSHAK VVGTACDVCK PEDVKKLVKF SINEPGSVDI WTVTGIAS

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.