Factsheet for Bra034882.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005827.1-P	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	Bra005827.1-P	AT5G04900.1	22366162
AT4G13250.1	Bra005827.1-P	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67729	Canola	cytosol	59.96	95.51
AT4G13250.1	Thale cress	cytosol	87.32	87.5
Bra032697.1-P	Field mustard	cytosol, mitochondrion	89.34	83.93
GSMUA_Achr7P10870_001	Banana	mitochondrion	63.98	70.98
KRH48384	Soybean	plastid	69.82	67.51
VIT_11s0016g03890.t01	Wine grape	plastid	69.01	66.34
KRH39291	Soybean	plastid	68.21	65.83
PGSC0003DMT400077668	Potato	cytosol	62.37	63.79
Solyc07g024000.2.1	Tomato	plastid	61.97	63.64
HORVU3Hr1G030890.1	Barley	plastid	63.58	63.2
TraesCS3D01G159800.1	Wheat	mitochondrion	63.38	63.13
TraesCS3B01G179100.1	Wheat	mitochondrion	63.38	62.87
Os01t0227100-01	Rice	mitochondrion	63.38	62.5
EES02213	Sorghum	plastid	64.39	62.5
Zm00001d039312_P001	Maize	plastid	63.38	61.64
TraesCS3A01G151900.1	Wheat	mitochondrion	54.33	61.36
GSMUA_Achr10P...	Banana	cytosol	65.19	60.9
KXG33129	Sorghum	cytosol	6.04	41.67
OQU77869	Sorghum	mitochondrion	5.84	37.18
Bra005827.1-P	Field mustard	plastid	23.14	33.14

Protein Annotations

EnsemblPlants:Bra034882.1	EnsemblPlants:Bra034882.1-P	EnsemblPlantsGene:Bra034882	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	ncoils:Coil	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19
PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0002545646
UniProt:M4F1D6	MapMan:7.12.6.6.4.1	:	:	:	:

Description

AT4G13250 (E=1e-247) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA08:-:5730505..5732999

Molecular Weight (calculated)

54826.4 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.178

Length

497 amino acids

Sequence
(BLAST)

001: MVTLTKLQVY PRCLDHRLGF MDHQRVGSRL SCREGNKRVY VHRCESDLEK KKVERGRKRE KEGKGLWDSL KSGVTKLGFL TKDEYNQKVQ NLEMVFSSIA
101: VQIARYIVTM TSTGAILLIG FQLSGGDGSM NSLVWYSWLG GVIIGTMTGA NMVLEDHYRA GPRNVVITGS TRGLGKALAR EFLLSGDRVI VTSRSSESVD
201: MTVKELQQNL KEIMSKASES DRKKLGFAKV VGIASDVCKP EDVERLSSFA VEELGSINIW INNAGTNKGF RPLLDFTEED IKQIVSTNLI GSILCTRGAM
301: EVMSRQDNGG HIFNMDGAGS GGSSTPLTAV YGSTKCGLRQ FHGSVAKESQ KTKVGLHTAS PGMVLTELLL SGSSIKNKQM FNIICELPET VARTLVPRMR
401: VVKGSGKSVN YLTPPRILLA IVTSWLRRGR WFDDQGRALY AAEADRLRNW AENRTRLSLT DAMEMYTENT WVSVFSLSVV CAFIIVSSTT PSSFPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.