Factsheet for Bra032697.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005827.1-P	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	Bra005827.1-P	AT5G04900.1	22366162
AT4G13250.1	Bra005827.1-P	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01120	Canola	cytosol, mitochondrion	96.79	99.81
AT4G13250.1	Thale cress	cytosol	86.77	92.54
Bra034882.1-P	Field mustard	cytosol	83.93	89.34
GSMUA_Achr7P10870_001	Banana	mitochondrion	61.44	72.54
KRH48384	Soybean	plastid	67.11	69.07
KRH39291	Soybean	plastid	65.97	67.77
VIT_11s0016g03890.t01	Wine grape	plastid	65.78	67.31
PGSC0003DMT400077668	Potato	cytosol	60.87	66.26
Solyc07g024000.2.1	Tomato	plastid	59.92	65.5
HORVU3Hr1G030890.1	Barley	plastid	61.81	65.4
TraesCS3D01G159800.1	Wheat	mitochondrion	61.63	65.33
TraesCS3B01G179100.1	Wheat	mitochondrion	61.44	64.87
Os01t0227100-01	Rice	mitochondrion	61.44	64.48
EES02213	Sorghum	plastid	62.19	64.26
TraesCS3A01G151900.1	Wheat	mitochondrion	52.74	63.41
Zm00001d039312_P001	Maize	plastid	61.06	63.21
GSMUA_Achr10P...	Banana	cytosol	62.57	62.22
KXG33129	Sorghum	cytosol	5.67	41.67
OQU77869	Sorghum	mitochondrion	5.86	39.74
Bra005827.1-P	Field mustard	plastid	22.12	33.72

Protein Annotations

EnsemblPlants:Bra032697.1	EnsemblPlants:Bra032697.1-P	EnsemblPlantsGene:Bra032697	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	ncoils:Coil	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	PFAM:PF00106
PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0002543FF5	UniProt:M4EV64
MapMan:35.1	:	:	:	:	:

Description

AT4G13250 (E=2e-133) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA04:+:5405022..5407384

Molecular Weight (calculated)

58665.3 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.082

Length

529 amino acids

Sequence
(BLAST)

001: MTTITKLQVY PRCLEHRLGF MDHQRVGSRL NCRYNRVYVH RCEGDSGEKK VERRRKREKL KGNGLWSSLK SGVLGVTKLG FLSKDEYNQK IEKLEMVFSS
101: IAVQIARYIV TMTSTGAILL IGFQLSGGDS SMNSLVWYSW LGGVIIGTMT GANMVLEDHY RAGPRNVVIT GSTRGLGKAL AREFLLSGDR VIVTSRSSES
201: VDMTVKELEE NLKEIMSNAS ESARKKLADA KVVGIACDVC KPEDVEKLSN FAVKELGSIN IWINNAGTNK GFRPLLDFTE EDIRQARILH GPCSFNLWLV
301: TLVWSFVGLI FEMLQIVSTN LIGSILCTRG AMEVMSRQNN GGHIFNMDGA GSGGSSTPLT AVYGSTKCGL RQFHSSIVKE SQKTKVGLHT ASPGMVLTEL
401: LLSGSSIKNK QMFNIICELP ETVARTLVPR MRVVKGSGKS VNYLTPPRIL LAIVTSWLRR SRWFDDQGRA LYAAEADRLR NWAENRTRFS LTDAMEMYTE
501: NTWVSVFSLS VVCAFIILSS TTPSSFPGT

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.