Factsheet for Solyc07g024000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g032660.2.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13250.1	Solyc05g032660.2.1	AT5G04900.1	22366162
AT4G13250.1	Solyc05g032660.2.1	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077668	Potato	cytosol	94.63	94.24
CDY67729	Canola	cytosol	46.28	71.79
GSMUA_Achr7P10870_001	Banana	mitochondrion	65.08	70.31
VIT_11s0016g03890.t01	Wine grape	plastid	70.25	65.76
KRH48384	Soybean	plastid	69.83	65.76
KRH39291	Soybean	plastid	68.59	64.47
Os01t0227100-01	Rice	mitochondrion	66.12	63.49
AT4G13250.1	Thale cress	cytosol	64.88	63.31
TraesCS3D01G159800.1	Wheat	mitochondrion	64.88	62.93
HORVU3Hr1G030890.1	Barley	plastid	64.88	62.8
EES02213	Sorghum	plastid	66.32	62.7
TraesCS3B01G179100.1	Wheat	mitochondrion	64.67	62.48
CDY47326	Canola	cytosol, mitochondrion	63.43	62.4
Zm00001d039312_P001	Maize	plastid	65.7	62.23
Bra034882.1-P	Field mustard	cytosol	63.64	61.97
CDY01120	Canola	cytosol, mitochondrion	65.5	61.79
GSMUA_Achr10P...	Banana	cytosol	67.56	61.47
TraesCS3A01G151900.1	Wheat	mitochondrion	55.17	60.68
Bra032697.1-P	Field mustard	cytosol, mitochondrion	65.5	59.92
KXG33129	Sorghum	cytosol	5.99	40.28
OQU77869	Sorghum	mitochondrion	5.58	34.62
Solyc05g032660.2.1	Tomato	plastid	23.76	33.24

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009536	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0019538	GO:GO:0034256	GO:GO:0055114	UniProt:K4CD52	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR24314	PANTHER:PTHR24314:SF19	InterPro:SDR_fam	SUPFAM:SSF51735
EnsemblPlantsGene:Solyc07g024000.2	EnsemblPlants:Solyc07g024000.2.1	TMHMM:TMhelix	UniParc:UPI000276ABE9	SEG:seg	:

Description

Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G13250) UniProtKB/Swiss-Prot;Acc:Q93ZA0]

Coordinates

chr7:+:23795954..23800624

Molecular Weight (calculated)

53313.8 Da

IEP (calculated)

9.357

GRAVY (calculated)

0.024

Length

484 amino acids

Sequence
(BLAST)

001: MDMVAKVHVS THHLLPSSNV FRPSIVKVHG RRRVFVQPCR SFKSDDAEYV KVNKLVGAIR SAVWSCSKPS LRTENKLREA MEMLEERLFW LALYVGRYII
101: TMMSTGVVMF VGFQLSGGDS QMNELIWYSW LGGIIIGTMI GSNLVLDDVA RAGPRNVLIT GSTRGLGKAL AREFLLSGDR VIVTSRSPAS VRLTIEELEE
201: NLKEAVNAAT GSARLKLAHA KLVGMACDVS EPVDVKELGK FAADELGYID IWVNNAGTNK GFRPLLEFTD NDIQEIVSTN LIGSILCTKE AIQIMKTQSE
301: GGHVFNMDGA GSGGSSTPLT AVYGSTKCGL RQLQSSLLKE CKRSKVGVHT ASPGMVLTDL LLSGSTIQNR QMFNIICEHP ETVARTLVPR MRVVKGSGRA
401: INYLTPPRIL IALVTAWLRR GRWFDDQGRA LYAAEADRLR NWAESRTRFS FTDAMEMYTE NTWVSVFSLS VVCAFIILSS TGST

Best Arabidopsis Sequence Match ( AT4G13250.1 )
(BLAST)

001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT

Arabidopsis Description

NYC1Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93ZA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.