Factsheet for Solyc05g032660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 28183294

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13102	Soybean	plastid	70.23	69.63
VIT_01s0010g00590.t01	Wine grape	plastid	68.79	68.99
Os03t0654600-01	Rice	plastid	66.76	67.35
TraesCS4D01G012100.1	Wheat	plastid	66.76	66.96
AT5G04900.1	Thale cress	plastid	67.34	66.95
TraesCS4A01G299400.1	Wheat	plastid	66.47	66.86
Bra005827.1-P	Field mustard	plastid	67.05	66.86
CDX80928	Canola	plastid	67.05	66.86
CDY11316	Canola	plastid	67.05	66.48
TraesCS6B01G357800.1	Wheat	plastid	65.32	65.7
KXG37915	Sorghum	plastid	63.29	64.22
GSMUA_Achr2P03080_001	Banana	plastid	65.61	63.94
Zm00001d013651_P001	Maize	plastid	62.43	63.34
TraesCS4D01G053400.2	Wheat	plastid	61.27	63.1
TraesCS4A01G261200.1	Wheat	plastid	59.54	62.61
CDY43444	Canola	plastid	43.35	56.39
PGSC0003DMT400033934	Potato	plastid	17.92	54.87
Solyc07g024000.2.1	Tomato	plastid	33.24	23.76

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016491	GO:GO:0019538
GO:GO:0034256	GO:GO:0055114	UniProt:K4C047	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	EnsemblPlantsGene:Solyc05g032660.2	EnsemblPlants:Solyc05g032660.2.1	UniParc:UPI00027660B7	:	:

Description

No Description!

Coordinates

chr5:+:46224358..46239463

Molecular Weight (calculated)

37926.7 Da

IEP (calculated)

9.476

GRAVY (calculated)

-0.073

Length

346 amino acids

Sequence
(BLAST)

001: MAEMSVTTAS LQSFPKSLLC SLSTRKFNSS FHPSAILSPI SRFCLISKFN SFRFSAAVVK AASSPHANTK EPMLPPYDVL ITGASKGIGY ALAKEFLKAG
101: DNVIICSRSD ERVVSALDRL RVETGKQHVW GTKCDVREGD DVKNLVAFAK EKLQYIDIWI NNAGSNAYSF KPLAEASDED LIQVVTTNTL GLMICCREAI
201: NLMQNQPRGG HIFNIDGAGS DGRPTPRFAA YGATKRSVVH LTKSLQAELE MQDVKNVLVH NLSPGMVTTD LLMSGANTKQ AKFFINVLAE PADVVAEYLV
301: PNIRSIPTNG STKATYIRFL TGLKAYSQIF SRIAFGARRN RYVLED

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.