Factsheet for TraesCS4D01G053400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G012100.1	Wheat	plastid	91.37	88.99
TraesCS4A01G261200.1	Wheat	plastid	86.01	87.84
TraesCS6B01G357800.1	Wheat	plastid	80.65	78.78
Os03t0654600-01	Rice	plastid	77.98	76.38
Zm00001d013651_P001	Maize	plastid	72.32	71.26
KXG37915	Sorghum	plastid	72.02	70.97
Bra005827.1-P	Field mustard	plastid	64.88	62.82
CDX80928	Canola	plastid	64.58	62.54
CDY11316	Canola	plastid	64.58	62.18
VIT_01s0010g00590.t01	Wine grape	plastid	63.69	62.03
Solyc05g032660.2.1	Tomato	plastid	63.1	61.27
AT5G04900.1	Thale cress	plastid	63.39	61.21
GSMUA_Achr2P03080_001	Banana	plastid	64.58	61.13
KRH13102	Soybean	plastid	63.39	61.03
CDY43444	Canola	plastid	41.96	53.01
PGSC0003DMT400033934	Potato	plastid	10.71	31.86
TraesCS3D01G159800.1	Wheat	mitochondrion	34.52	23.25

Protein Annotations

EnsemblPlants:TraesCS4D01G053400.2	EnsemblPlantsGene:TraesCS4D01G053400	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS	PANTHER:PTHR24314
PANTHER:PTHR24314:SF15	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	SEG:seg
SUPFAM:SSF51735	TIGR:cd05233	MapMan:7.12.6.6.4.2	:	:	:

Description

No Description!

Coordinates

chr4D:+:29405853..29410072

Molecular Weight (calculated)

36738.4 Da

IEP (calculated)

10.027

GRAVY (calculated)

-0.169

Length

336 amino acids

Sequence
(BLAST)

001: MATVAASLPL RAAARAGPAP SRAPPSDAAF FPGRPWQRGL AARGRPWGSV GWFRAEALPG GAGGPPRREP MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN
101: VVICSRSAER VESVANDLKK EFGEQHVGLS VMLEKALVDF ARDKPEYIDI WINNAGSNAY SYKPLVETSD EALIEVITTN TLGLMLCCRE AINMMWNQPR
201: GGHIFNIDDG RPTPRFAAYG ATKRSVVHLT KSLQVKAELQ MNEVNDVVVH NLSPGMVTTD LLMSGATAKQ AKFFINILAE TPDVVADYLV PNIREIPTKQ
301: SMKPTYIRFL TGLKAYSRIF SRIAFGARRN KYVAED

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.