Factsheet for TraesCS6B01G357800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G299400.1	Wheat	plastid	85.17	85.17
TraesCS4D01G012100.1	Wheat	plastid	84.3	84.06
TraesCS4A01G261200.1	Wheat	plastid	79.94	83.59
TraesCS4D01G053400.2	Wheat	plastid	78.78	80.65
Os03t0654600-01	Rice	plastid	79.36	79.59
KXG37915	Sorghum	plastid	76.16	76.83
Zm00001d013651_P001	Maize	plastid	75.58	76.25
VIT_01s0010g00590.t01	Wine grape	plastid	66.57	66.38
Bra005827.1-P	Field mustard	plastid	66.28	65.71
CDX80928	Canola	plastid	66.28	65.71
CDY11316	Canola	plastid	66.28	65.33
Solyc05g032660.2.1	Tomato	plastid	65.7	65.32
GSMUA_Achr2P03080_001	Banana	plastid	67.15	65.07
KRH13102	Soybean	plastid	65.12	64.18
AT5G04900.1	Thale cress	plastid	64.83	64.08
CDY43444	Canola	plastid	43.6	56.39
PGSC0003DMT400033934	Potato	plastid	10.47	31.86
TraesCS3B01G179100.1	Wheat	mitochondrion	37.5	25.75

Protein Annotations

EnsemblPlants:TraesCS6B01G357800.1	EnsemblPlantsGene:TraesCS6B01G357800	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0034256	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
SEG:seg	SUPFAM:SSF51735	TIGR:cd05233	MapMan:7.12.6.6.4.2	:	:

Description

No Description!

Coordinates

chr6B:-:625887125..625891302

Molecular Weight (calculated)

37501.2 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.194

Length

344 amino acids

Sequence
(BLAST)

001: MATVAASLPL RAAARAGPAP SRAPPSDAAF FPGRPWQRGL AARGRPWGSV GWFRAEALPG GAGGPPRREP MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN
101: VVICSRSAER VESVTNDLKK EFGEQHVLGT VCDVREGKDV KALVDFARDK LEYIDIWINN AGSNAYSYKP LVETSDEALI EVITTNTLGL MLCCREAINM
201: MWNQPRGGHI FNIDGAGSDG RPTPRFAAYG ATKRSVVHLT KSLQAELQMN EVNNVVVHNL SPGMVTTDLL MSGATTKQAK FFINILAETP DVVADYLVPN
301: IREIPTKQSM KPTYIRFLTG LKAYSRIFSR IAFGARRNKY VAED

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.