CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005827.1-P	Field mustard	plastid	97.42	97.98
CDX80928	Canola	plastid	96.56	97.12
CDY43444	Canola	plastid	68.19	89.47
AT5G04900.1	Thale cress	plastid	88.25	88.51
VIT_01s0010g00590.t01	Wine grape	plastid	67.91	68.7
TraesCS4A01G299400.1	Wheat	plastid	66.48	67.44
TraesCS4D01G012100.1	Wheat	plastid	66.48	67.25
KXG37915	Sorghum	plastid	65.62	67.16
Solyc05g032660.2.1	Tomato	plastid	66.48	67.05
KRH13102	Soybean	plastid	66.76	66.76
Zm00001d013651_P001	Maize	plastid	65.04	66.57
Os03t0654600-01	Rice	plastid	65.33	66.47
TraesCS6B01G357800.1	Wheat	plastid	65.33	66.28
TraesCS4D01G053400.2	Wheat	plastid	62.18	64.58
TraesCS4A01G261200.1	Wheat	plastid	59.89	63.53
GSMUA_Achr2P03080_001	Banana	plastid	63.9	62.82
PGSC0003DMT400033934	Potato	plastid	11.46	35.4
CDY67729	Canola	cytosol	25.5	28.53
CDY01120	Canola	cytosol, mitochondrion	33.52	22.81
CDY47326	Canola	cytosol, mitochondrion	31.81	22.56

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	GO:A0A078FDB2	UniProt:A0A078FDB2	EnsemblPlants:CDY11316	ProteinID:CDY11316
ProteinID:CDY11316.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00049359001	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081
ScanProsite:PS00061	PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI0004EE3E3B	SEG:seg	:	:	:	:

Description

BnaA03g01520DBnaA03g01520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDB2]

Coordinates

chrLK032010:+:680762..682951

Molecular Weight (calculated)

38017.7 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.128

Length

349 amino acids

Sequence
(BLAST)

001: MAASSGFHVS SSPLLRLRSS SVAYAAQPPF LSPCNGRRLL AESFGLSTVT VSRQNLSVSP PSAVVEARIS GEREPMTPPY NVLITGSTKG IGHALAREFL
101: KAGDNVVICS RSAERVESVV KSLKEEYGEE HVWGTKCDVR EGKDVKDLVS YCQNNLKYID IWINNAGSNA YSFKPLSEAS DEDLIEVVKT NTLGLMLCCR
201: EAMNMMLTQS RGGHIFNIDG AGSDGRPTPR FAAYGATKRS VVHLTKSLQA ELQMQDVKNV VVHNLSPGMV TTDLLMSGAT TKQAKFFINV LAEPAEVVAE
301: YLVPNIRAIP ASGSMKPTYI RFLTGIKAYT KIFSRVALGA RKNRYVTEE

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.