CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005827.1-P	Field mustard	plastid	98.56	98.56
CDY11316	Canola	plastid	97.12	96.56
CDY43444	Canola	plastid	71.47	93.23
AT5G04900.1	Thale cress	plastid	87.9	87.64
VIT_01s0010g00590.t01	Wine grape	plastid	68.59	68.99
TraesCS4A01G299400.1	Wheat	plastid	66.86	67.44
TraesCS4D01G012100.1	Wheat	plastid	66.86	67.25
Solyc05g032660.2.1	Tomato	plastid	66.86	67.05
KXG37915	Sorghum	plastid	65.71	66.86
Zm00001d013651_P001	Maize	plastid	65.42	66.57
Os03t0654600-01	Rice	plastid	65.71	66.47
TraesCS6B01G357800.1	Wheat	plastid	65.71	66.28
KRH13102	Soybean	plastid	66.57	66.19
TraesCS4D01G053400.2	Wheat	plastid	62.54	64.58
TraesCS4A01G261200.1	Wheat	plastid	59.94	63.22
GSMUA_Achr2P03080_001	Banana	plastid	64.27	62.82
PGSC0003DMT400033934	Potato	plastid	11.53	35.4
CDY67729	Canola	cytosol	25.07	27.88
CDY01120	Canola	cytosol, mitochondrion	33.14	22.42
CDY47326	Canola	cytosol, mitochondrion	31.41	22.15

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	GO:A0A078D0Q3	EnsemblPlants:CDX80928	ProteinID:CDX80928	ProteinID:CDX80928.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	EnsemblPlantsGene:GSBRNA2T00134338001
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR24314
PANTHER:PTHR24314:SF15	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0004EE2463	SEG:seg

Description

BnaC03g01820D

Coordinates

chrLK031823:+:869092..871307

Molecular Weight (calculated)

37638.3 Da

IEP (calculated)

8.932

GRAVY (calculated)

-0.078

Length

347 amino acids

Sequence
(BLAST)

001: MAASSGFHIS SSPFLRLRSS SVAYAAQPPF LSPCNGRSLA ESFGLATVTV SRQNLSVSPP SAVVEARISG TIDPMTPPYN VLITGSTKGI GHALAREFLK
101: AGDNVVICSR SAERVESVVE SLKEEYGEHV WGTKCDVREG KDVKDLVGYC QKNLKYIDIW INNAGSNAYS FKPLSEASDE DLIEVVKTNT LGLMLCCREA
201: MNMMLTQSRG GHIFNIDGAG SDGRPTPRFA AYGATKRSVV HLTKSLQAEL QMQDVKNVVV HNLSPGMVTT DLLMSGATTK QAKFFINVLA EPAEVVAEYL
301: VPNIRAIPAS GSMKPTYIRF LTGIKAYTKI FSRVALGARK NRYVTEE

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.