Factsheet for VIT_01s0010g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13102	Soybean	plastid	70.72	69.91
Solyc05g032660.2.1	Tomato	plastid	68.99	68.79
CDX80928	Canola	plastid	68.99	68.59
Os03t0654600-01	Rice	plastid	68.12	68.51
Bra005827.1-P	Field mustard	plastid	68.7	68.3
CDY11316	Canola	plastid	68.7	67.91
AT5G04900.1	Thale cress	plastid	67.83	67.24
TraesCS4A01G299400.1	Wheat	plastid	66.67	66.86
GSMUA_Achr2P03080_001	Banana	plastid	68.7	66.76
TraesCS6B01G357800.1	Wheat	plastid	66.38	66.57
TraesCS4D01G012100.1	Wheat	plastid	66.38	66.38
KXG37915	Sorghum	plastid	65.22	65.98
Zm00001d013651_P001	Maize	plastid	64.93	65.69
TraesCS4A01G261200.1	Wheat	plastid	61.45	64.44
TraesCS4D01G053400.2	Wheat	plastid	62.03	63.69
CDY43444	Canola	plastid	44.06	57.14
PGSC0003DMT400033934	Potato	plastid	9.57	29.2
VIT_11s0016g03890.t01	Wine grape	plastid	35.07	23.4

Protein Annotations

EntrezGene:100265035	wikigene:100265035	Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	ProteinID:CBI27402	ProteinID:CBI27402.3
UniProt:D7TA80	EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0010304	GO:GO:0015996	GO:GO:0016491	GO:GO:0019538
GO:GO:0034256	GO:GO:0055114	EntrezGene:LOC100265035	wikigene:LOC100265035	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR24314	PANTHER:PTHR24314:SF15	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00015C97BD	ArrayExpress:VIT_01s0010g00590	EnsemblPlantsGene:VIT_01s0010g00590	EnsemblPlants:VIT_01s0010g00590.t01
unigene:Vvi.22411	RefSeq:XP_002266979	RefSeq:XP_002266979.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:15586483..15619187

Molecular Weight (calculated)

37897.6 Da

IEP (calculated)

9.467

GRAVY (calculated)

-0.116

Length

345 amino acids

Sequence
(BLAST)

001: MAITASVSFL SPSPSRLFCL QNHNPLSQPL FSLPFHSHAF LTFASPQKRL KPTAIPKNIT PSAQASNDSA PMLPPYNVLI TGSTKGIGFA LAREFLKAGD
101: NVIISSRSAE RVESSVESLR REFGKHHVWG TTCDVRKGED VKDLVAFAQE NLKYIDIWIN NAGSNAYSYK PLAEASDEDL IEVVTTNTLG LMICCREAIK
201: MMLNQPQGGH IFNIDGAGSD GRPTPRFAAY GATKRSVVHL TKSLQAELQM QDVKNVVVHN LSPGMVTTDL LMSGATTKQA KFFINVLAEP AEVVAEYLVP
301: NIRSIPVNGS TKPTYIRFLT GLKAYSQIFS RFAFGARRNR YLLED

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.