Factsheet for Zm00001d013651_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37915	Sorghum	plastid	82.4	82.4
Os03t0654600-01	Rice	plastid	76.83	76.38
TraesCS6B01G357800.1	Wheat	plastid	76.25	75.58
TraesCS4D01G012100.1	Wheat	plastid	75.95	75.07
TraesCS4A01G299400.1	Wheat	plastid	75.66	75.0
TraesCS4D01G053400.2	Wheat	plastid	71.26	72.32
TraesCS4A01G261200.1	Wheat	plastid	69.5	72.04
CDX80928	Canola	plastid	66.57	65.42
Bra005827.1-P	Field mustard	plastid	66.28	65.13
CDY11316	Canola	plastid	66.57	65.04
VIT_01s0010g00590.t01	Wine grape	plastid	65.69	64.93
KRH13102	Soybean	plastid	65.4	63.9
GSMUA_Achr2P03080_001	Banana	plastid	66.28	63.66
AT5G04900.1	Thale cress	plastid	63.93	62.64
Solyc05g032660.2.1	Tomato	plastid	63.34	62.43
CDY43444	Canola	plastid	43.99	56.39
PGSC0003DMT400033934	Potato	plastid	9.68	29.2
Zm00001d039312_P001	Maize	plastid	36.36	24.27

Protein Annotations

Gene3D:3.40.50.720	MapMan:7.12.6.6.4.2	ProteinID:AQK64079.1	EMBL:BT087448	UniProt:C4J9F1	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0034256	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR24314
PANTHER:PTHR24314:SF15	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0001A4C767	EnsemblPlantsGene:Zm00001d013651
EnsemblPlants:Zm00001d013651_P001	EnsemblPlants:Zm00001d013651_T001	SEG:seg	:	:	:

Description

Chlorophyll(ide) b reductase NOL chloroplastic

Coordinates

chr5:+:16205069..16210643

Molecular Weight (calculated)

37254.1 Da

IEP (calculated)

10.351

GRAVY (calculated)

-0.242

Length

341 amino acids

Sequence
(BLAST)

001: MAATFTVAAR LPLRGPARAP SRPAVAAVTR LRSRQERRGL AATGGRGPAR VRAETFSGGG GVGRRDPMAP PYNVLITGST KGIGYALARK FLEAGDNVII
101: CSRSAQKVES VVGDLKEEYG EQHVWGTVCD VRNGKDVKAL VEFARDKLKH IDIWINNAGS NAYTYKPLVE TSDEALMEII TTNTLGLMIC CREAINMMRN
201: QPRGGHIFNL DGAGSDGRPT PRFAAYGATK RSVVHLTKSL QAELQMNEVN NVMVHNLSPG MVTTDLLMSG ATTKQAKIFI NILAEPPDVV ADYLVPNVRE
301: IPTKQSMKPT YIRFLTGLKA YSRIFSRLAF GARRNKYVTE D

Best Arabidopsis Sequence Match ( AT5G04900.1 )
(BLAST)

001: MATWSGFNVS SSPLLRLRSS SVSNVTKLPF LSPICRRRLL AERFGLATVV VTRQNLTVTP SSAAVEARIS GKREPMTPPY NILITGSTKG IGYALAREFL
101: KAGDNVVICS RSAERVETAV QSLKEEFGEH VWGTKCDVTE GKDVRELVAY SQKNLKYIDI WINNAGSNAY SFKPLAEASD EDLIEVVKTN TLGLMLCCRE
201: AMNMMLTQSR GGHIFNIDGA GSDGRPTPRF AAYGATKRSV VHLTKSLQAE LQMQDVKNVV VHNLSPGMVT TDLLMSGATT KQAKFFINVL AEPAEVVAEY
301: LVPNIRAIPA SGSMKPTYIR FLTGIKAYTK IFSRVALGAR KNRYVTEE

Arabidopsis Description

NOLChlorophyll(ide) b reductase NOL, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEU3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.